Package: seqprep Version: 1.1-1 Severity: serious Justification: fails to build from source
Hi, seqprep fails to build everywhere: https://buildd.debian.org/status/package.php?p=seqprep&suite=unstable either (e.g. arm64) with fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' cp SeqPrep /sbuild-nonexistent/bin cp: cannot create regular file '/sbuild-nonexistent/bin': No such file or directory make[1]: [install] Error 1 (ignored) Makefile:16: recipe for target 'install' failed make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install make[1]: Entering directory '/«PKGBUILDDIR»' dh_install sed -i 's#../SeqPrep#/usr/bin/seqprep#' /«PKGBUILDDIR»/debian/seqprep-data/usr/share/doc/seqprep/examples/RUNTEST.sh sed: can't read /«PKGBUILDDIR»/debian/seqprep-data/usr/share/doc/seqprep/examples/RUNTEST.sh: No such file or directory make[1]: *** [override_dh_install] Error 2 debian/rules:28: recipe for target 'override_dh_install' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [binary-arch] Error 2 debian/rules:5: recipe for target 'binary-arch' failed dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 why is the install error ignored? this should fail earlier ... why is it going to touch $HOME? or with testsuite output mismatch (e.g. i386): debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' # This checks that the tests run and produce byte-identical results. cd Test && mkdir -p out info && \ bash -xc 'gzcat(){ zcat "$@" ; } ; . RUNTEST.sh' + . RUNTEST.sh ++ ../SeqPrep -6 -f ./data/multiplex_bad_contam_1.fq.gz -r ./data/multiplex_bad_contam_2.fq.gz -A GATCGGAAGAGCACACGTCT -B AGATCGGAAGAGCGTCGT -1 ./out/pe_bad_contam_merged_1.fastq.gz -2 ./out/pe_bad_contam_merged_2.fastq.gz -s ./out/pe_bad_contam_merged_s.fastq.gz -E ./info/alignments_merged.txt.gz Processing reads... \ Pairs Processed: 100000 Pairs Merged: 14306 Pairs With Adapters: 4091 Pairs Discarded: 2228 CPU Time Used (Minutes): 0.346382 ++ ../SeqPrep -6 -f ./data/multiplex_bad_contam_1.fq.gz -r ./data/multiplex_bad_contam_2.fq.gz -A GATCGGAAGAGCACACGTCT -B AGATCGGAAGAGCGTCGT -1 ./out/pe_bad_contam_trimmed_1.fastq.gz -2 ./out/pe_bad_contam_trimmed_2.fastq.gz -E ./info/alignments_trimmed.txt.gz Processing reads... \ Pairs Processed: 100000 Pairs Merged: 0 Pairs With Adapters: 4091 Pairs Discarded: 2228 CPU Time Used (Minutes): 0.342337 ++ prog=gzcat ++ gzcat ./out/pe_bad_contam_trimmed_1.fastq.gz ++ python seqlens.py ++ zcat ./out/pe_bad_contam_trimmed_1.fastq.gz ++ gzcat ./out/pe_bad_contam_trimmed_2.fastq.gz ++ zcat ./out/pe_bad_contam_trimmed_2.fastq.gz ++ python seqlens.py ++ gzcat ./out/pe_bad_contam_merged_1.fastq.gz ++ python seqlens.py ++ zcat ./out/pe_bad_contam_merged_1.fastq.gz ++ gzcat ./out/pe_bad_contam_merged_2.fastq.gz ++ python seqlens.py ++ zcat ./out/pe_bad_contam_merged_2.fastq.gz ++ gzcat ./out/pe_bad_contam_merged_s.fastq.gz ++ zcat ./out/pe_bad_contam_merged_s.fastq.gz ++ python seqlens.py [ `cat Test/info/pe_*.txt | md5sum | cut -b -10` = 8bc8e0787e ] make[1]: *** [override_dh_auto_test] Error 1 debian/rules:19: recipe for target 'override_dh_auto_test' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 debian/rules:5: recipe for target 'build-arch' failed Andreas -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
