Source: mapsembler2 Version: 2.2.1+dfsg-2 Severity: important Tags: patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256
Hi, Please find attached a patch to support the hdf5 1.8.13 new packaging layout currently in experimental. BTW this patch also fixes an FTBFS related to a help2man invokation in debian/rules. Because this bug is in the way of the upcoming hdf5 transition I intend to NMU in a few days. Please tell me if you prefer uploading the fix by yourself. Many thanks in advance, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQEcBAEBCAAGBQJT9NgvAAoJEO/obGx//s+DU0cH/A+rYFLpMV7nTRtxxczk98yP YW/ykzU2DxxGj4z5LqvN2/0xs/3H7U4vtW2kWCj1GhurXNb45NDcb4FflWzyRXkJ iC4WDEV26ZsoCTC55z3jxUqTEknwK1aAfJM9Q81nhXfDgg45XjMbY5oV9Ond1W7w xMiR9jgK/jse0Nbtvzv8InDzwbxNDvTWMgK30IzwTENGWEF87/b/yRd1HXJra2IG rqu3sr6kT4CJEtR+wmlMDaQbQbniiFQHmUfr59YUi3FD5O2kFQvMLfuOjaA4FccB cW+6KpYSpW0Tz9hs9VxxxUGFbS8o8R7oq+otldrpfSq+oicrlZVk+WB+aILvH4s= =bVjs -----END PGP SIGNATURE-----
diff -Nru mapsembler2-2.2.1+dfsg/debian/changelog mapsembler2-2.2.1+dfsg/debian/changelog --- mapsembler2-2.2.1+dfsg/debian/changelog 2014-08-20 08:49:24.000000000 +0200 +++ mapsembler2-2.2.1+dfsg/debian/changelog 2014-08-20 12:23:12.000000000 +0200 @@ -1,3 +1,11 @@ +mapsembler2 (2.2.1+dfsg-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + * Fix FTBFS due to broken help2man call in debian/rules. + + -- Gilles Filippini <[email protected]> Wed, 20 Aug 2014 12:21:26 +0200 + mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium * Fix kissreads file conflict with discoSnp (Closes: #758648). diff -Nru mapsembler2-2.2.1+dfsg/debian/rules mapsembler2-2.2.1+dfsg/debian/rules --- mapsembler2-2.2.1+dfsg/debian/rules 2014-08-20 08:42:14.000000000 +0200 +++ mapsembler2-2.2.1+dfsg/debian/rules 2014-08-20 12:21:07.000000000 +0200 @@ -5,6 +5,11 @@ SRC_VERSION =$(shell dpkg-parsechangelog | sed -ne 's/^Version: \(\([0-9]\+\):\)\?\(.*\)-.*/\3/p') +ifneq ($(wildcard /usr/include/hdf5/serial),) + export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial + export DEB_LDFLAGS_MAINT_APPEND := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial +endif + CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS) CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) $(CPPFLAGS) CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) $(CPPFLAGS) @@ -44,6 +49,6 @@ mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph help2man --help-option=-h --no-discard-stderr --version-string=$(SRC_VERSION) ./kissreads_graph/mapsembler2_kissreads_graph > mapsembler2_kissreads_graph.1 cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline - help2man --help-option=-h --no-discard-stderr --version-string=$(SRC_VERSION) run_mapsembler2_pipeline > run_mapsembler2_pipeline.1 + help2man --help-option=-h --no-discard-stderr --version-string=$(SRC_VERSION) ./run_mapsembler2_pipeline > run_mapsembler2_pipeline.1 dh_install
