Package: r-bioc-genomicranges Version: 1.16.3 Severity: normal Tags: patch User: [email protected] Usertags: autopkgtest
Dear Maintainer, The tests are failing in debci because it is missing dependency. Below the autopkgtest's log: Loading required package: IRanges Loading required package: GenomeInfoDb > GenomicRanges:::.test() Note: method with signature 'GRangesList#Vector' chosen for function 'countOverlaps', target signature 'GRangesList#GIntervalTree'. "Vector#GenomicRanges" would also be valid Warning messages: 1: In .Seqinfo.mergexy(x, y) : Each of the 2 combined objects has sequence levels not in the other: - in 'x': chr1, chr2 - in 'y': chr4 Make sure to always combine/compare objects based on the same reference genome (use suppressWarnings() to suppress this warning). 2: In .Seqinfo.mergexy(x, y) : Each of the 2 combined objects has sequence levels not in the other: - in 'x': chr1, chr2 - in 'y': chr4 Make sure to always combine/compare objects based on the same reference genome (use suppressWarnings() to suppress this warning). Error in library(digest) : there is no package called 'digest' This is occurring because is missing the r-cran-digest dependency, to correct the suit test I only added this dependency in debian/tests/control. Thanks for consider it! -- System Information: Debian Release: jessie/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 3.14-2-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash
diff -Nru r-bioc-genomicranges-1.16.3.orig/debian/tests/control r-bioc-genomicranges-1.16.3/debian/tests/control --- r-bioc-genomicranges-1.16.3.orig/debian/tests/control 2014-08-09 16:28:43.842570866 -0300 +++ r-bioc-genomicranges-1.16.3/debian/tests/control 2014-08-09 16:29:11.986951701 -0300 @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @, r-cran-runit +Depends: @, r-cran-runit, r-cran-digest Restrictions: allow-stderr
