It was uploaded earlier today. Thanks! On August 4, 2014 2:46:50 PM EDT, Christoph Schmidt-Hieber <chris...@gmx.de> wrote: >Dear Yaroslav, > >I've uploaded a new version of Stimfit to debian mentors that should >hopefully fix bug #756699: > >https://mentors.debian.net/package/stimfit > >As the bug is apparently affecting the current hdf5 transition it >would be good to upload it soon. > >Thanks for your work. > >Best wishes, >Christoph > >On Fri, Aug 01, 2014 at 12:51:08PM +0200, Gilles Filippini wrote: >> Hi Christoph, >> >> Thanks for your prompt answer. >> >> Christoph Schmidt-Hieber a écrit , Le 01/08/2014 12:10: >> > Thanks for the patch. It's been applied in the master and 0.14 >> > branches: >> > >> > https://github.com/neurodroid/stimfit/commit/b589dea2 >> > >> > Please review. Is any further action required from my side? >> >> It seems OK to me, except that since you have applied the patch >against >> configure.ac to the source tree you'll have to bump the upstream >version >> and drop the NMU line from the changelog. >> >> Would you mind uploading to unstable as soon as possible? >> >> Many thanks in advance, >> >> _g. >> >> > >> > Best >> > Christoph >> > >> > On Fri, Aug 01, 2014 at 12:51:44AM +0200, Gilles Filippini wrote: >> >> Source: stimfit >> >> Version: 0.13.15-1 >> >> Severity: important >> >> Tags: patch >> >> User: p...@debian.org >> >> Usertags: HDF5-transition >> >> >> > Hi, >> > >> > The hdf5 1.8.13 package in experimental features a new layout for >> > headers and libraries, so that all the binary packages are now >> > co-installable. >> > >> > Please find attached a patch proposal to support both the current >> > and the new layouts. >> > >> > Because this bug is in the way of the hdf5 transition I intend to >NMU >> > in a few days. I apologize for the urge, and I hope this approach >won't >> > offend you. Please tell me otherwise. >> > >> > Kind regards, >> > >> > _g. >> > >> > -- System Information: >> > Debian Release: jessie/sid >> > APT prefers testing >> > APT policy: (500, 'testing'), (1, 'experimental') >> > Architecture: i386 (i686) >> > >> > Kernel: Linux 3.14-1-486 >> > Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) >> > Shell: /bin/sh linked to /bin/dash >> > >> > >> >> diff -Nru stimfit-0.13.15/debian/changelog >stimfit-0.13.15/debian/changelog >> >> --- stimfit-0.13.15/debian/changelog 2014-02-16 14:23:17.000000000 >+0100 >> >> +++ stimfit-0.13.15/debian/changelog 2014-07-26 20:24:11.000000000 >+0200 >> >> @@ -1,3 +1,12 @@ >> >> +stimfit (0.13.15-1.1) unstable; urgency=low >> >> + >> >> + * Non-maintainer upload. >> >> + * Support hdf5 1.8.13 new packaging layout. >> >> + * New patch fix-enable-debian.patch to support dpkg-buildflags >with >> >> + --enable-module. >> >> + >> >> + -- Gilles Filippini <p...@debian.org> Sat, 26 Jul 2014 18:48:03 >+0200 >> >> + >> >> stimfit (0.13.15-1) unstable; urgency=low >> >> >> >> * Fix half duration limits bug >> >> diff -Nru stimfit-0.13.15/debian/patches/fix-enable-debian.patch >stimfit-0.13.15/debian/patches/fix-enable-debian.patch >> >> --- >stimfit-0.13.15/debian/patches/fix-enable-debian.patch 1970-01-01 >01:00:00.000000000 +0100 >> >> +++ >stimfit-0.13.15/debian/patches/fix-enable-debian.patch 2014-07-26 >20:22:45.000000000 +0200 >> >> @@ -0,0 +1,26 @@ >> >> +Index: stimfit-0.13.15/configure.ac >> >> >+=================================================================== >> >> +--- stimfit-0.13.15.orig/configure.ac 2014-02-16 >13:38:45.000000000 +0100 >> >> ++++ stimfit-0.13.15/configure.ac 2014-07-26 20:22:40.900894278 >+0200 >> >> +@@ -100,15 +100,17 @@ >> >> + else >> >> + if test "$enable_debian" = "yes" ; then >> >> + LIBSTF_LDFLAGS="-Wl,-rpath,/usr/lib/stimfit >-avoid-version" >> >> +- CPPFLAGS="${CPPFLAGS} `dpkg-buildflags --get >CPPFLAGS`" >> >> +- CFLAGS="${CFLAGS} `dpkg-buildflags --get CFLAGS`" >> >> +- CXXFLAGS="${CXXFLAGS} `dpkg-buildflags --get >CXXFLAGS`" >> >> +- LDFLAGS="${LDFLAGS} `dpkg-buildflags --get >LDFLAGS`" >> >> + else >> >> + LIBSTF_LDFLAGS="-Wl,-rpath,${prefix}/lib/stimfit >-avoid-version" >> >> + fi >> >> + CPPFLAGS="${CPPFLAGS}" >> >> + fi >> >> ++ if test "$enable_debian" = "yes" ; then >> >> ++ CPPFLAGS="${CPPFLAGS} `dpkg-buildflags --get >CPPFLAGS`" >> >> ++ CFLAGS="${CFLAGS} `dpkg-buildflags --get CFLAGS`" >> >> ++ CXXFLAGS="${CXXFLAGS} `dpkg-buildflags --get >CXXFLAGS`" >> >> ++ LDFLAGS="${LDFLAGS} `dpkg-buildflags --get LDFLAGS`" >> >> ++ fi >> >> + STF_PYTHON_LIBNAME="libpystf.so" >> >> + STFIO_PYTHON_LIBNAME="libpystfio.so" >> >> + ;; >> >> diff -Nru stimfit-0.13.15/debian/patches/series >stimfit-0.13.15/debian/patches/series >> >> --- stimfit-0.13.15/debian/patches/series 1970-01-01 >01:00:00.000000000 +0100 >> >> +++ stimfit-0.13.15/debian/patches/series 2014-07-26 >20:21:50.000000000 +0200 >> >> @@ -0,0 +1 @@ >> >> +fix-enable-debian.patch >> >> diff -Nru stimfit-0.13.15/debian/rules >stimfit-0.13.15/debian/rules >> >> --- stimfit-0.13.15/debian/rules 2014-02-16 14:23:17.000000000 >+0100 >> >> +++ stimfit-0.13.15/debian/rules 2014-07-31 18:39:53.000000000 >+0200 >> >> @@ -15,6 +15,11 @@ >> >> MAKEFLAGS += -j$(NUMJOBS) >> >> endif >> >> >> >> +ifneq ($(wildcard >/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) >> >> + export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial >> >> + export DEB_LDFLAGS_MAINT_APPEND := >-Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial >> >> +endif >> >> + >> >> build: build-arch build-indep >> >> build-arch: build-stamp >> >> build-indep: build-stamp >> >> > > > >-- >Christoph Schmidt-Hieber >Wolfson Institute for Biomedical Research >University College London >Gower Street >London WC1E 6BT >UK >Phone +44 (0)7551994016
-- Sent from a phone which beats iPhone.
