Package: logol Severity: important Tags: patch Dear Maintainer,
The versions of Ruby that will be supported in Jessie already include rubygems. So the 'rubygems' package will go away together with ruby1.8 since they are now deprecated. Please update your depencies to remove rubygems (and possibly the version check on ruby). I have attached control.diff, implementing this change in the control file. Please also consider applying the attached 'remove_rubygems_usage' patch to remove explicit (unneeded) usage of rubygems in scripts. Thanks! Cédric
--- logol-1.6.9.old/debian/control 2014-01-16 16:24:19.505700720 +0100 +++ logol-1.6.9/debian/control 2014-01-16 16:55:46.469753353 +0100 @@ -5,7 +5,7 @@ Uploaders: Olivier Sallou <osal...@debian.org> Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/logol/trunk/ Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/logol/ -Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant,ruby (>=1.8),rubygems, gawk, swi-prolog (>=6.4.1-3), +Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant, ruby, gawk, swi-prolog (>=6.4.1-3), libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libgnumail-java, liblog4j1.2-java,texlive, texlive-latex-extra, tex4ht, libncursesw5-dev, ruby-cassiopee (>=0.1.12), ant-optional @@ -14,7 +14,7 @@ Package: logol Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby (>=1.8),rubygems, gawk, +Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby, gawk, libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libgnumail-java, liblog4j1.2-java, ruby-cassiopee (>=0.1.12), logol-bin
Description: Remove explicit use of rubygems Supported version of Ruby in Jessie+ are higher that 1.9 and they all automatically load rubygems Author: Cédric Boutillier <bou...@debian.org> Last-Update: 2014-01-16 --- a/tools/logolIndex.rb +++ b/tools/logolIndex.rb @@ -1,5 +1,4 @@ #!/usr/bin/env ruby -require 'rubygems' require 'optparse' require 'logger' require 'cassiopee-mt' --- a/tools/logolSearch.rb +++ b/tools/logolSearch.rb @@ -22,9 +22,9 @@ DIR=File.expand_path(File.dirname(__FILE__)) if muteOnly == 1 - cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming" + cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming" else - cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError + cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError end Open3.popen3(cmd) do |stdin,stdout,stderr, wait_thr|
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