Hi Ben,
Do you think that bowtie2 can be fixed so it will work on architectures
other than i386 and amd64 ?
here is the build status:
https://buildd.debian.org/status/package.php?p=bowtie2
Thank you,
Alex
On 04/09/2012 02:41 AM, Nobuhiro Iwamatsu wrote:
Source: bowtie2
Version: 2.0.0-beta5-1
Severity: serious
Justification: fails to build from source
Hi,
bowtie2 has failed in building by the architecture other than i386* and amd64*.
https://buildd.debian.org/status/package.php?p=bowtie2
http://buildd.debian-ports.org/status/package.php?p=bowtie2&suite=sid
-----
make[1]: Entering directory
`/build/buildd-bowtie2_2.0.0-beta5-1-armel-_uybUi/bowtie2-2.0.0-beta5'
/usr/bin/g++ -O3 -m32 -msse2 -funroll-loops -g3
-DCOMPILER_OPTIONS="\"-O3 -m32 -msse2 -funroll-loops -g3 \"" \
-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\""
-DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\""
-DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\""
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE
-DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE2
-DNDEBUG -Wall \
\
-o bowtie2-build bt2_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp
bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp
multikey_qsort.cpp diff_sample.cpp bowtie_build_main.cpp \
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
-----
Please check your package.
Best regards,
Nobuhiro
--
Nobuhiro Iwamatsu
iwamatsu at {nigauri.org / debian.org}
GPG ID: 40AD1FA6
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