test_boost.hpp:142:42: error: 'dummy_cond' is not a member of 'boost::test_tools::tt_detail')

Debian Bug Tracking System Sun, 08 Mar 2026 18:51:26 -0700

Your message dated Mon, 09 Mar 2026 01:48:42 +0000
with message-id <[email protected]>
and subject line Bug#1129798: fixed in ncbi-blast+ 2.17.0+ds-7
has caused the Debian Bug report #1129798,
regarding ncbi-blast+: FTBFS: 
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 'dummy_cond' 
is not a member of 'boost::test_tools::tt_detail'
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
1129798: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129798
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:ncbi-blast+
Version: 2.17.0+ds-6
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202603/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:ncbi-blast+, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --sourcedirectory=c++ --with-autoreconf
   dh_auto_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf
   dh_autoreconf_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save
cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save
cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save
cp c++/configure.orig configure.orig.save
dh_clean
#Tricky - for each module directory there may be several module files
#or there may be none but then there is still a module named after the
#directory.  Clean everything!
for x in c++/src/objects/* ; do \

[... snipped ...]

make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
cd objtools/blast/seqdb_reader/demo/ &&  NCBI_BUT_EXPENDABLE=' (but 
expendable)' /usr/bin/make  --jobserver-auth=fifo:/tmp/GMfifo15634 
APP_PROJ=tax4blast LIB_PROJ="" UNIX_PROJ=""  sources= 
configurables=configurables.null
make[4]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[5]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/g++  -std=gnu++20 -c  -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE 
 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include   
-DNCBI_APP_BUILT_AS=tax4blast 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp -o 
tax4blast.o 
/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ 
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp 
-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 
-fPIE -pie tax4blast.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib 
-L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lsqlitewrapp -lxobjutil -lblastdb 
-lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq 
-lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi 
-lsqlite3 -llmdb -lpthread -lsqlite3 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 
-lmbedcrypto -lz -lresolv -lm -lpthread -o tax4blast
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f 
tax4blast /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f tax4blast /<<PKGBUILDDIR>>/c++/BUILD/bin/tax4blast
make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
cd objtools/blast/seqdb_reader/test/ &&  NCBI_BUT_EXPENDABLE=' (but 
expendable)' /usr/bin/make  --jobserver-auth=fifo:/tmp/GMfifo15634 
APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ=""  sources= 
configurables=configurables.null
make[4]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In 
member function âvoid CSeqDBPerfApp::x_UpdateMemoryUsage(int)â:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23:
 warning: âbool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)â is 
deprecated [-Wdeprecated-declarations]
  114 |     if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) {
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:477:13: note: declared here
  477 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* 
shared);
      |             ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In 
member function âint CSeqDBPerfApp::x_ScanDatabase()â:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31:
 warning: comparison of integer expressions of different signedness: 
âssize_tâ {aka âlong intâ} and âstd::vector<int>::size_typeâ {aka 
âlong unsigned intâ} [-Wsign-compare]
  154 |         for (ssize_t i = 0; i < oids2iterate.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/usr/bin/g++  -std=gnu++20 -c  -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE 
 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
-DNCBI_APP_BUILT_AS=seqdb_perf 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o 
seqdb_perf.o 
/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ 
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp 
-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 
-fPIE -pie seqdb_perf.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib 
-L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr 
-lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode 
-lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 
-llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz 
-lresolv -lm -lpthread -o seqdb_perf
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f 
seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_perf
make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[4]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
cd objtools/blast/seqdb_writer/unit_test/ &&  /usr/bin/make  
--jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=writedb_lmdb_unit_test 
LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[4]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp -o mail_report.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -Dmake[5]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++  -std=gnu++20 -c  -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE 
 -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 
-D_LARGEFILE64_SOURCE  -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
-Wno-unused-local-typedefs   -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp
 -o writedb_lmdb_unit_test.o 
/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ 
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp 
-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 
-fPIE -pie writedb_lmdb_unit_test.o 
-Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib 
-ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging 
-lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit 
-lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral 
-lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls 
-lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_lmdb_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f 
writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f writedb_lmdb_unit_test 
/<<PKGBUILDDIR>>/c++/BUILD/bin/writedb_lmdb_unit_test
make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
cd objtools/blast/seqdb_writer/unit_test/ &&  /usr/bin/make  
--jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=writedb_unit_test LIB_PROJ="" 
UNIX_PROJ=""  sources= configurables=configurables.null
make[4]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âbool 
ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, 
int, const std::vector<int>&, const std::vector<int>&, const 
std::vector<bool>&, int)â:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison 
of integer expressions of different signedness: âintâ and 
âstd::vector<bool>::size_typeâ {aka âlong unsigned intâ} 
[-Wsign-compare]
  259 |         for (int j = i + 1; j < spans.size(); j++)
      |                             ~~^~~~~~~~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::EmptyBioseq::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::DuplicateId::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::MismatchedDb_Bioseq::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In function âvoid 
writedb::RegisterTooManyVariantsOfSameMaskingAlgorithm(ncbi::objects::EBlast_filter_program,
 size_t)â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::DuplicateAlgoId::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::TooManyAlgoId::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::UndefinedAlgoID::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid writedb::MaskDataBoundsError::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::InvalidAliasFileGeneration_NonExistentDb::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::InvalidAliasFileGeneration_NonExistentDbAggregation::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::InvalidAliasFileGeneration_NonExistentMultiVolDbAggregation::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::InvalidAliasFileGeneration_NoGisInBlastDB::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::CBuildDatabase_WriteToInvalidPathWindows::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:
 In member function âvoid 
writedb::CBuildDatabase_WriteToInvalidPathUnix::test_method()â:
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: 
âdummy_condâ is not a member of âboost::test_tools::tt_detailâ
  142 | } while( ::boost::test_tools::tt_detail::dummy_cond() )                 
\
      |                                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion 
of macro âBOOST_CHECK_THROW_IMPL_EXâ
  247 |     BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, )
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of 
macro âBOOST_CHECK_THROW_IMPLâ
  120 | #define BOOST_REQUIRE_THROW( S, E )         BOOST_CHECK_THROW_IMPL( S, 
E, true, "", REQUIRE )
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/15/bits/stl_iterator.h:78,
                 from /usr/include/c++/15/bits/stl_algobase.h:67,
                 from /usr/include/c++/15/algorithm:62,
                 from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180,
                 from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
                 from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
                 from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
                 from /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:32:
In function âconstexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = 
int; _Args = {const int&}]â,
    inlined from âstatic constexpr void 
std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, 
_Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]â at 
/usr/include/c++/15/bits/alloc_traits.h:676:21,
    inlined from âconstexpr void std::vector<_Tp, 
_Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; 
_Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/vector.tcc:586:26,
    inlined from âconstexpr void std::vector<_Tp, _Alloc>::push_back(const 
value_type&) [with _Tp = int; _Alloc = std::allocator<int>]â at 
/usr/include/c++/15/bits/stl_vector.h:1427:21,
    inlined from âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const 
std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â at 
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:221:21:
/usr/include/c++/15/bits/stl_construct.h:110:16: warning: âstartâ may be 
used uninitialized [-Wmaybe-uninitialized]
  110 |         return ::new(__loc) _Tp(std::forward<_Args>(__args)...);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âvoid 
ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, 
std::vector<int>&, std::vector<int>&, std::vector<bool>&)â:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:211:9: note: âstartâ 
was declared here
  211 |     int start, stop;
      |         ^~~~~
In function âconstexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = 
int; _Args = {const int&}]â,
    inlined from âstatic constexpr void 
std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, 
_Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]â at 
/usr/include/c++/15/bits/alloc_traits.h:676:21,
    inlined from âconstexpr void std::vector<_Tp, 
_Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; 
_Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/vector.tcc:586:26,
    inlined from âconstexpr void std::vector<_Tp, _Alloc>::push_back(const 
value_type&) [with _Tp = int; _Alloc = std::allocator<int>]â at 
/usr/include/c++/15/bits/stl_vector.h:1427:21,
    inlined from âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const 
std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â at 
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:222:20:
/usr/include/c++/15/bits/stl_construct.h:110:16: warning: âstopâ may be 
used uninitialized [-Wmaybe-uninitialized]
  110 |         return ::new(__loc) _Tp(std::forward<_Args>(__args)...);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âvoid 
ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, 
std::vector<int>&, std::vector<int>&, std::vector<bool>&)â:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:211:16: note: âstopâ 
was declared here
  211 |     int start, stop;
      |                ^~~~
make[5]: *** [/<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.rules:103: 
writedb_unit_test.o] Error 1
make[5]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++  -std=gnu++20 -c  -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE 
 -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 
-D_LARGEFILE64_SOURCE  -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
-Wno-unused-local-typedefs    -DNCBI_APP_BUILT_AS=writedb_unit_test 
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp
 -o writedb_unit_test.o 
/<<PKGBUILDDIR>>/c++/BUILD/bin/run_with_lock: Unable to rename log file 
make_writedb_unit_test.loFAILED: 
src/objtools/blast/seqdb_writer/unit_test/Makefile.writedb_unit_test.app
g.new: No such file or directory.
make[5]: Entering directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/bin/rm -f writedb_unit_test .writedb_unit_test.stamp
make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:337: 
all.nonusr] Error 2
make[4]: Leaving directory 
'/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[3]: *** [Makefile.flat:3486: writedb_unit_test.exe.real] Error 2
make[3]: *** Waiting for unfinished jobs....
/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp: In function 
âncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, 
const std::string&, ncbi::SIZE_TYPE, bool, bool)â:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 
âstatic ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)â is 
deprecated [-Wdeprecated-declarations]
   47 |         pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, 
str_case);
      |               
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
                 from 
/<<PKGBUILDDIR>>/c++/include/objtools/edit/parse_text_options.hpp:34,
                 from 
/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here
 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/source_edit.cpp -o source_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp -o 
parse_text_options.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/publication_edit.cpp -o 
publication_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/bui/<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp:336:15:
 warning: âstd::string ncbi::objects::edit::GetTextObjectDescription(const 
ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)â 
defined but not used [-Wunused-function]
  336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, 
CScope& scope, const string& product)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
ld/ncbi-blast+-shRcBS/ncbi-blast+-2.17.0+ds/c++/BUILD/inc 
-I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp -o external_annots.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp -o 
feature_propagate.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp -o 
text_object_description.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o 
/usr/bin/g++  -std=gnu++20 -c -Wall -Wno-format-y2k  -pthread -fopenmp -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC 
  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include  
/<<PKGBUILDDIR>>/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o 
/bin/rm -f libxobjedit.so .libxobjedit.so.stamp
/usr/bin/g++  -std=gnu++20  -shared -o libxobjedit.so -Wl,-r 
[too-long-redacted] -lxutil -lxncbi -lm -lpthread  
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f 
libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjedit.so
/bin/ln -f .xobjedit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjedit.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[2]: *** [Makefile.flat:442: ptb_all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[1]: *** [debian/rules:113: override_dh_auto_build-arch] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:221: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: ncbi-blast+
Source-Version: 2.17.0+ds-7
Done: Aaron M. Ucko <[email protected]>

We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-blast+ package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 08 Mar 2026 21:26:22 -0400
Source: ncbi-blast+
Architecture: source
Version: 2.17.0+ds-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Closes: 1129798
Changes:
 ncbi-blast+ (2.17.0+ds-7) unstable; urgency=medium
 .
   * debian/patches/support_boost_1.87 (new): Fix builds with Boost 1.87
     (which dropped ...::tt_detail::dummy_cond) through at least 1.90.
     (Closes: #1129798.)
   * Standards-Version: 4.7.3 (routine-update)
Checksums-Sha1:
 b6183f752ca302fdcd011da4ad0998a9490d3dea 2547 ncbi-blast+_2.17.0+ds-7.dsc
 d548c13d5eb5152fd53b25a3e8e9279dc150414b 45436 
ncbi-blast+_2.17.0+ds-7.debian.tar.xz
Checksums-Sha256:
 88bd66c89e5146375280d73ebafffe674ac7b20af05f861fd7ddfe2ad38e0b07 2547 
ncbi-blast+_2.17.0+ds-7.dsc
 25eba47da15fae8de90a3c943f55ea58f8e2cc77e130a1d9de5fbfbe2faea2ce 45436 
ncbi-blast+_2.17.0+ds-7.debian.tar.xz
Files:
 69c72b9ead4c6ce265ff4349ead14591 2547 science optional 
ncbi-blast+_2.17.0+ds-7.dsc
 087a7d22c0da37abd81dc91022129612 45436 science optional 
ncbi-blast+_2.17.0+ds-7.debian.tar.xz

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--- End Message ---

Bug#1129798: marked as done (ncbi-blast+: FTBFS: /<>/c++/include/corelib/test_boost.hpp:142:42: error: 'dummy_cond' is not a member of 'boost::test_tools::tt_detail')

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