Hello, Bruno. Thank you, I will check. I assumed that was not the issue because when I compile inside docker files are created.
David On Tue, Aug 17, 2021, 4:30 AM Bruno Turcksin <bruno.turck...@gmail.com> wrote: > David, > > Have you try to create a new file and save it inside docker? What is your > user name in docker? Are you root? It could be a problem with your > permission. > > Best, > > Bruno > > On Saturday, August 7, 2021 at 3:07:56 PM UTC-4 dmon...@umich.edu wrote: > >> Sorry in my original email I wrote "This appears to happen if I try to >> run the code in serial." >> >> I meant it happens whether I try to run the code in serial or parallel >> (e.g., using "./main" or "mprun -n 4 main"). It makes no difference. >> >> Thank you, >> >> David >> >> On Sat, Aug 7, 2021 at 2:57 PM David Montiel Taboada <dmon...@umich.edu> >> wrote: >> >>> This is how I am launching the container, by the way: >>> >>> $ docker run -ti -v >>> ~/DockerWorkspace/phaseField/applications:/home/dealii/phaseField/applications >>> prismspf/prismspf:2.2 >>> >>> >>> >>> On Sat, Aug 7, 2021 at 2:55 PM David Montiel Taboada <dmon...@umich.edu> >>> wrote: >>> >>>> Hello, >>>> >>>> I am running a container of PRISMS-PF (which is built upon the >>>> dealii:v9.2.0-focal image). >>>> >>>> Inside the container, the code compiles successfully, but when I run >>>> it, I get the following error message: >>>> >>>> ---------------------------------------------------- >>>> PRISMS-PF: Exception on processing: >>>> >>>> -------------------------------------------------------- >>>> An error occurred in line <6909> of file >>>> </build/deal.ii-vFp8uU/deal.ii-9.2.0/source/base/data_out_base.cc> in >>>> function >>>> void dealii::DataOutInterface<dim, >>>> spacedim>::write_vtu_in_parallel(const string&, MPI_Comm) const [with >>>> int dim = 2; int spacedim = 2; std::string = >>>> std::__cxx11::basic_string<char>; MPI_Comm = ompi_communicator_t*] >>>> The violated condition was: >>>> ierr == MPI_SUCCESS >>>> Additional information: >>>> deal.II encountered an error while calling an MPI function. >>>> The description of the error provided by MPI is "MPI_ERR_ACCESS: invalid >>>> access mode". >>>> The numerical value of the original error code is 20. >>>> -------------------------------------------------------- >>>> >>>> Aborting! >>>> ---------------------------------------------------- >>>> >>>> This appears to happen if I try to run the code in serial. >>>> >>>> However I only have the issue on a Linux machine (I have no problem if >>>> I run on a Mac or Windows machine, for instance) which leads me to believe >>>> it may be a conflict between the Docker container and the underlying OS. >>>> >>>> Has anyone encountered something similar? Any idea of what may be going >>>> on? >>>> >>>> Thank you! >>>> >>>> David >>>> >>> -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to the Google Groups > "deal.II User Group" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dealii+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/368cf5ae-ac31-4883-91f2-8ef1b794a684n%40googlegroups.com > <https://groups.google.com/d/msgid/dealii/368cf5ae-ac31-4883-91f2-8ef1b794a684n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/CAJdNbL-JNq-gGJo8F4TT4_YDmz_jYoDjQsqs4GF-UAX7SnzOjQ%40mail.gmail.com.
