Sorry that was indeed a wrong file. I attached the right one.
On Thursday, January 25, 2018 at 11:25:21 AM UTC-5, Eldar Khattatov wrote:
>
> Hi,
>
> Thank you for the reply.
> I attached the cmake log file.
>
> On Wednesday, January 24, 2018 at 11:35:53 PM UTC-5, Matthias Maier wrote:
>>
>> Hi,
>>
>> On Wed, Jan 24, 2018, at 11:17 CST, Eldar Khattatov <eld.kh...@gmail.com>
>> wrote:
>>
>> > I forgot to mention, I tried both the development and 8.5.1versions of
>> > deal.II and the errors are the same.
>>
>> The test in question tries to compile a very minimalistic
>>
>> int main () { return 0; }
>>
>> with the given compiler, link interface and linker options.
>>
>> Have a look at <build directory>/CMakeFiles/CMakeErrors.log the detailed
>> compiler output of what exactly fails should be at the very bottom.
>>
>> I am curious what is going wrong.
>>
>> Best,
>> Matthias
>>
>
--
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Performing C++ SOURCE FILE Test DEAL_II_HAVE_AVX failed with the following
output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_ef482/fast"
/usr/bin/make -f CMakeFiles/cmTC_ef482.dir/build.make
CMakeFiles/cmTC_ef482.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_ef482.dir/src.cxx.o
/usr/bin/c++ -DDEAL_II_HAVE_AVX -o CMakeFiles/cmTC_ef482.dir/src.cxx.o -c
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:3:6: error:
#error "__AVX__ flag not set, no support for AVX"
#error "__AVX__ flag not set, no support for AVX"
^~~~~
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx: In function
‘int main()’:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:35:9:
warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi]
b = _mm256_set1_pd ((volatile double)(2.25));
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CMakeFiles/cmTC_ef482.dir/build.make:65: recipe for target
'CMakeFiles/cmTC_ef482.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_ef482.dir/src.cxx.o] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_ef482/fast' failed
make: *** [cmTC_ef482/fast] Error 2
Return value: 1
Source file was:
#ifndef __AVX__
#error "__AVX__ flag not set, no support for AVX"
#endif
#include <immintrin.h>
class VectorizedArray
{
public:
VectorizedArray &
operator += (const VectorizedArray &vec)
{
data = _mm256_add_pd (data, vec.data);
return *this;
}
__m256d data;
};
inline
VectorizedArray
operator + (const VectorizedArray &u, const VectorizedArray &v)
{
VectorizedArray tmp = u;
return tmp+=v;
}
int main()
{
__m256d a, b;
const unsigned int vector_bytes = sizeof(__m256d);
const int n_vectors = vector_bytes/sizeof(double);
__m256d * data =
reinterpret_cast<__m256d*>(_mm_malloc (2*vector_bytes, vector_bytes));
double * ptr = reinterpret_cast<double*>(&a);
ptr[0] = (volatile double)(1.0);
for (int i=1; i<n_vectors; ++i)
ptr[i] = 0.0;
b = _mm256_set1_pd ((volatile double)(2.25));
data[0] = _mm256_add_pd (a, b);
data[1] = _mm256_mul_pd (b, data[0]);
ptr = reinterpret_cast<double*>(&data[1]);
unsigned int return_value = 0;
if (ptr[0] != 7.3125)
return_value = 1;
for (int i=1; i<n_vectors; ++i)
if (ptr[i] != 5.0625)
return_value = 1;
VectorizedArray c, d, e;
c.data = b;
d.data = b;
e = c + d;
ptr = reinterpret_cast<double*>(&e.data);
for (int i=0; i<n_vectors; ++i)
if (ptr[i] != 4.5)
return_value = 1;
_mm_free (data);
return return_value;
}
Performing C++ SOURCE FILE Test DEAL_II_HAVE_AVX512 failed with the following
output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_c6d9d/fast"
/usr/bin/make -f CMakeFiles/cmTC_c6d9d.dir/build.make
CMakeFiles/cmTC_c6d9d.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_c6d9d.dir/src.cxx.o
/usr/bin/c++ -DDEAL_II_HAVE_AVX512 -o CMakeFiles/cmTC_c6d9d.dir/src.cxx.o
-c /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:3:6: error:
#error "__AVX512F__ flag not set, no support for AVX512"
#error "__AVX512F__ flag not set, no support for AVX512"
^~~~~
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx: In function
‘int main()’:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:18:9:
warning: AVX512F vector return without AVX512F enabled changes the ABI [-Wpsabi]
b = _mm512_set1_pd(x);
~~^~~~~~~~~~~~~~~~~~~
CMakeFiles/cmTC_c6d9d.dir/build.make:65: recipe for target
'CMakeFiles/cmTC_c6d9d.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_c6d9d.dir/src.cxx.o] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_c6d9d/fast' failed
make: *** [cmTC_c6d9d/fast] Error 2
Return value: 1
Source file was:
#ifndef __AVX512F__
#error "__AVX512F__ flag not set, no support for AVX512"
#endif
#include <immintrin.h>
int main()
{
__m512d a, b;
const unsigned int vector_bytes = sizeof(__m512d);
const int n_vectors = vector_bytes/sizeof(double);
__m512d * data =
reinterpret_cast<__m512d*>(_mm_malloc (2*vector_bytes, vector_bytes));
double * ptr = reinterpret_cast<double*>(&a);
ptr[0] = (volatile double)(1.0);
for (int i=1; i<n_vectors; ++i)
ptr[i] = 0.0;
const volatile double x = 2.25;
b = _mm512_set1_pd(x);
data[0] = _mm512_add_pd (a, b);
data[1] = _mm512_mul_pd (b, data[0]);
ptr = reinterpret_cast<double*>(&data[1]);
unsigned int return_value = 0;
if (ptr[0] != 7.3125)
return_value = 1;
for (int i=1; i<n_vectors; ++i)
if (ptr[i] != 5.0625)
return_value = 1;
_mm_free (data);
return return_value;
}
Performing C++ SOURCE FILE Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS failed
with the following output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_19d56/fast"
/usr/bin/make -f CMakeFiles/cmTC_19d56.dir/build.make
CMakeFiles/cmTC_19d56.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_19d56.dir/src.cxx.o
/usr/bin/c++ -DDEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS -std=c++17 -o
CMakeFiles/cmTC_19d56.dir/src.cxx.o -c
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx: In function
‘int main()’:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:6:14: error:
no match for ‘operator*’ (operand types are ‘double’ and ‘std::complex<float>’)
double() * std::complex<float>();
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:6:36: note:
deduced conflicting types for parameter ‘_Tp’ (‘double’ and ‘float’)
double() * std::complex<float>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:6:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘double’
double() * std::complex<float>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:6:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘double’
double() * std::complex<float>();
^
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:7:27: error:
no match for ‘operator*’ (operand types are ‘std::complex<float>’ and ‘double’)
std::complex<float>() * double();
~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:7:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘double’
std::complex<float>() * double();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:7:36: note:
deduced conflicting types for parameter ‘const _Tp’ (‘float’ and ‘double’)
std::complex<float>() * double();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:7:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘double’
std::complex<float>() * double();
^
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:8:13: error:
no match for ‘operator*’ (operand types are ‘float’ and ‘std::complex<double>’)
float() * std::complex<double>();
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:8:36: note:
deduced conflicting types for parameter ‘_Tp’ (‘float’ and ‘double’)
float() * std::complex<double>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:8:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘float’
float() * std::complex<double>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:8:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘float’
float() * std::complex<double>();
^
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:9:28: error:
no match for ‘operator*’ (operand types are ‘std::complex<double>’ and ‘float’)
std::complex<double>() * float();
~~~~~~~~~~~~~~~~~~^~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:9:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘float’
std::complex<double>() * float();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:9:36: note:
deduced conflicting types for parameter ‘const _Tp’ (‘double’ and ‘float’)
std::complex<double>() * float();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:9:36: note:
mismatched types ‘const std::complex<_Tp>’ and ‘float’
std::complex<double>() * float();
^
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:10:28: error:
no match for ‘operator*’ (operand types are ‘std::complex<double>’ and
‘std::complex<float>’)
std::complex<double>() * std::complex<float>();
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:10:50: note:
deduced conflicting types for parameter ‘_Tp’ (‘std::complex<double>’ and
‘float’)
std::complex<double>() * std::complex<float>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:10:50: note:
deduced conflicting types for parameter ‘const _Tp’ (‘double’ and
‘std::complex<float>’)
std::complex<double>() * std::complex<float>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:10:50: note:
deduced conflicting types for parameter ‘_Tp’ (‘double’ and ‘float’)
std::complex<double>() * std::complex<float>();
^
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:11:27: error:
no match for ‘operator*’ (operand types are ‘std::complex<float>’ and
‘std::complex<double>’)
std::complex<float>() * std::complex<double>();
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:404:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const _Tp&, const std::complex<_Tp>&)
operator*(const _Tp& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:404:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:11:50: note:
deduced conflicting types for parameter ‘_Tp’ (‘std::complex<float>’ and
‘double’)
std::complex<float>() * std::complex<double>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:395:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const _Tp&)
operator*(const complex<_Tp>& __x, const _Tp& __y)
^~~~~~~~
/usr/include/c++/7/complex:395:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:11:50: note:
deduced conflicting types for parameter ‘const _Tp’ (‘float’ and
‘std::complex<double>’)
std::complex<float>() * std::complex<double>();
^
In file included from
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/complex:386:5: note: candidate: template<class _Tp>
std::complex<_Tp> std::operator*(const std::complex<_Tp>&, const
std::complex<_Tp>&)
operator*(const complex<_Tp>& __x, const complex<_Tp>& __y)
^~~~~~~~
/usr/include/c++/7/complex:386:5: note: template argument
deduction/substitution failed:
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx:11:50: note:
deduced conflicting types for parameter ‘_Tp’ (‘float’ and ‘double’)
std::complex<float>() * std::complex<double>();
^
CMakeFiles/cmTC_19d56.dir/build.make:65: recipe for target
'CMakeFiles/cmTC_19d56.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_19d56.dir/src.cxx.o] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_19d56/fast' failed
make: *** [cmTC_19d56/fast] Error 2
Source file was:
#include <complex>
int main()
{
double() * std::complex<float>();
std::complex<float>() * double();
float() * std::complex<double>();
std::complex<double>() * float();
std::complex<double>() * std::complex<float>();
std::complex<float>() * std::complex<double>();
return 0;
}
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_493eb/fast"
/usr/bin/make -f CMakeFiles/cmTC_493eb.dir/build.make
CMakeFiles/cmTC_493eb.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_493eb.dir/CheckSymbolExists.c.o
/usr/bin/cc -o CMakeFiles/cmTC_493eb.dir/CheckSymbolExists.c.o -c
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTC_493eb
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_493eb.dir/link.txt
--verbose=1
/usr/bin/cc -rdynamic CMakeFiles/cmTC_493eb.dir/CheckSymbolExists.c.o -o
cmTC_493eb
CMakeFiles/cmTC_493eb.dir/CheckSymbolExists.c.o: In function `main':
CheckSymbolExists.c:(.text+0x1b): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_493eb.dir/build.make:97: recipe for target 'cmTC_493eb' failed
make[1]: *** [cmTC_493eb] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_493eb/fast' failed
make: *** [cmTC_493eb/fast] Error 2
File
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
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(void)argc;
return 0;
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Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_60093/fast"
/usr/bin/make -f CMakeFiles/cmTC_60093.dir/build.make
CMakeFiles/cmTC_60093.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_60093.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTC_60093.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-3.9/Modules/CheckFunctionExists.c
Linking C executable cmTC_60093
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_60093.dir/link.txt
--verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic
CMakeFiles/cmTC_60093.dir/CheckFunctionExists.c.o -o cmTC_60093 -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_60093.dir/build.make:97: recipe for target 'cmTC_60093' failed
make[1]: *** [cmTC_60093] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_60093/fast' failed
make: *** [cmTC_60093/fast] Error 2
Performing C++ SOURCE FILE Test SCALAPACK_LIBRARY_HAS_BLACS failed with the
following output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_77c31/fast"
/usr/bin/make -f CMakeFiles/cmTC_77c31.dir/build.make
CMakeFiles/cmTC_77c31.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_77c31.dir/src.cxx.o
/usr/bin/c++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include -DSCALAPACK_LIBRARY_HAS_BLACS
-o CMakeFiles/cmTC_77c31.dir/src.cxx.o -c
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx
Linking CXX executable cmTC_77c31
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_77c31.dir/link.txt
--verbose=1
/usr/bin/c++ -DSCALAPACK_LIBRARY_HAS_BLACS -rdynamic
CMakeFiles/cmTC_77c31.dir/src.cxx.o -o cmTC_77c31
-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempi_ignore_tkr.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_mpifh.so /usr/lib/libmpi.so
/usr/lib/x86_64-linux-gnu/libscalapack-openmpi.so
/usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so
-lgfortran -lquadmath -lm -lc -lgcc_s -lgcc
CMakeFiles/cmTC_77c31.dir/src.cxx.o: In function `main':
src.cxx:(.text+0x10): undefined reference to `Csys2blacs_handle'
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_77c31.dir/build.make:105: recipe for target 'cmTC_77c31' failed
make[1]: *** [cmTC_77c31] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_77c31/fast' failed
make: *** [cmTC_77c31/fast] Error 2
Source file was:
#include <mpi.h>
extern "C"
{
int Csys2blacs_handle(MPI_Comm comm);
}
int main() {
const int res = Csys2blacs_handle(MPI_COMM_WORLD);
}
Performing C++ SOURCE FILE Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG failed with the
following output:
Change Dir: /home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_48103/fast"
/usr/bin/make -f CMakeFiles/cmTC_48103.dir/build.make
CMakeFiles/cmTC_48103.dir/build
make[1]: Entering directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_48103.dir/src.cxx.o
/usr/bin/c++ -DDEAL_II_HAVE_USABLE_FLAGS_DEBUG -pedantic -fPIC -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-placement-new -Wno-deprecated-declarations
-Wno-literal-suffix -fopenmp-simd -std=c++17 -Wno-parentheses
-Wno-unused-local-typedefs -Og -ggdb -Wa,--compress-debug-sections -o
CMakeFiles/cmTC_48103.dir/src.cxx.o -c
/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp/src.cxx
Linking CXX executable cmTC_48103
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_48103.dir/link.txt
--verbose=1
/usr/bin/c++ -DDEAL_II_HAVE_USABLE_FLAGS_DEBUG -pedantic -fPIC -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-placement-new -Wno-deprecated-declarations
-Wno-literal-suffix -fopenmp-simd -std=c++17 -Wno-parentheses
-Wno-unused-local-typedefs -Og -ggdb -Wa,--compress-debug-sections -rdynamic
CMakeFiles/cmTC_48103.dir/src.cxx.o -o cmTC_48103
-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -rdynamic -fuse-ld=gold
-pthread -ggdb /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so -ldl
/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libumfpack.so
/usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so
/usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so
/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so
/usr/lib/x86_64-linux-gnu/libamd.so -lrt
/usr/lib/x86_64-linux-gnu/libparpack.so /usr/lib/x86_64-linux-gnu/libarpack.so
/usr/lib/x86_64-linux-gnu/libboost_iostreams.so
/usr/lib/x86_64-linux-gnu/libboost_serialization.so
/usr/lib/x86_64-linux-gnu/libboost_system.so
/usr/lib/x86_64-linux-gnu/libboost_thread.so
/usr/lib/x86_64-linux-gnu/libboost_regex.so
/usr/lib/x86_64-linux-gnu/libboost_chrono.so
/usr/lib/x86_64-linux-gnu/libboost_date_time.so
/usr/lib/x86_64-linux-gnu/libboost_atomic.so -lpthread
/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so
/usr/lib/x86_64-linux-gnu/libnetcdf.so
/usr/lib/x86_64-linux-gnu/libscalapack-openmpi.so
/usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so
-lgfortran -lquadmath -lm -lc -lgcc_s -lgcc
/usr/lib/x86_64-linux-gnu/libblacs-openmpi.so
/usr/lib/x86_64-linux-gnu/libblacsCinit-openmpi.so
/usr/lib/x86_64-linux-gnu/libblacsF77init-openmpi.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempi_ignore_tkr.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_mpifh.so /usr/lib/libmpi.so
/usr/lib/x86_64-linux-gnu/libslepc.so /usr/lib/x86_64-linux-gnu/libpetsc.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so: error: undefined reference
to 'opal_uses_threads'
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so: error: undefined reference
to 'opal_class_initialize'
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so: error: undefined reference
to 'opal_list_item_t_class'
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_48103.dir/build.make:130: recipe for target 'cmTC_48103' failed
make[1]: *** [cmTC_48103] Error 1
make[1]: Leaving directory
'/home/username/Downloads/dealii/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_48103/fast' failed
make: *** [cmTC_48103/fast] Error 2
Source file was:
int main(){ return 0; }
