Bruno, Thanks for your help, now I have used candi, but I get the error of p4est using candi again:
error report: Verifying p4est-2.0.tar.gz p4est-2.0.tar.gz: OK Unpacking p4est-2.0.tar.gz Building p4est 2.0 CFLAGS_FAST: -O2 CFLAGS_DEBUG: -O0 -g This script tries configure and build the p4est library. Build FAST: /home/leslie/deal.ii-candi/tmp/build/p4est-2.0/FAST Build DEBUG: /home/leslie/deal.ii-candi/tmp/build/p4est-2.0/DEBUG Install FAST: /home/leslie/deal.ii-candi/p4est-2.0/FAST Install DEBUG: /home/leslie/deal.ii-candi/p4est-2.0/DEBUG Checking environment: CFLAGS P4EST_CFLAGS_FAST P4EST_CFLAGS_DEBUG See output in files .../config.output and .../make.output Build FAST version in /home/leslie/deal.ii-candi/tmp/build/p4est-2.0/FAST configure: WARNING: Static source code checker splint not found configure: WARNING: Static source code checker splint not found ar: `u' modifier ignored since `D' is the default (see `U') ar: `u' modifier ignored since `D' is the default (see `U') FAST version installed in /home/leslie/deal.ii-candi/p4est-2.0/FAST Build DEBUG version in /home/leslie/deal.ii-candi/tmp/build/p4est-2.0/DEBUG configure: WARNING: Static source code checker splint not found configure: WARNING: Static source code checker splint not found ar: `u' modifier ignored since `D' is the default (see `U') ar: `u' modifier ignored since `D' is the default (see `U') *Error: Error: p4est couldn't find zlib* how can I solve this problem in candi? Many thanks for your help again! Warm regards, Yaakov On Wednesday, December 13, 2017 at 2:35:14 PM UTC+1, Bruno Turcksin wrote: > > Yaakov, > > The error you get is pretty explicit, deal.II cannot find p4est. Check > that the path you give in -DP4EST_DIR is correct. You can also use candi > <https://github.com/dealii/candi> to install everything for you. > > Best, > > Bruno > > 2017-12-13 5:51 GMT-05:00 <fea...@gmail.com <javascript:>>: > >> Bruno & Dealii team, >> >> many thanks for your help. now I install ubuntu 16.04 (not 17.10) and try >> to install dealii again, >> I can use mpi for dealii, but I found I can't link pe4est to dealii ... >> >> error report: >> >> -- Include /home/leslie/dealii/cmake/configure/configure_1_mpi.cmake >> -- Found MPI_MPI_H >> -- MPI_VERSION: 3.0 >> -- MPI_LIBRARIES: >> /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libmpi_usempif08.so;/usr/lib/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/openmpi/lib/libmpi_mpifh.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libmpi.so >> -- MPI_INCLUDE_DIRS: >> /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi >> -- MPI_USER_INCLUDE_DIRS: >> /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi >> -- MPI_CXX_FLAGS: >> -- MPI_LINKER_FLAGS: -Wl,-rpath -Wl,/usr/lib/openmpi/lib >> -Wl,--enable-new-dtags >> -- Found MPI >> -- Performing Test MPI_WORKING_COMPILER >> -- Performing Test MPI_WORKING_COMPILER - Failed >> -- Unable to compile a simple test program. Try to drop "-fuse-ld=gold" >> from the linker flags. >> -- Performing Test MPI_WORKING_COMPILER >> -- Performing Test MPI_WORKING_COMPILER - Success >> -- DEAL_II_WITH_MPI successfully set up with external dependencies. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_1_threads.cmake >> -- TBB_LIBRARY not found! Call: >> -- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 >> lib) >> -- TBB_DEBUG_LIBRARY not found! Call: >> -- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES >> lib lib64 lib) >> -- TBB_INCLUDE_DIR not found! Call: >> -- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES >> include include/tbb tbb) >> -- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND >> *** >> -- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to >> NOTFOUND *** >> -- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set >> to NOTFOUND *** >> -- Could NOT find TBB >> -- DEAL_II_WITH_THREADS has unmet external dependencies. >> -- DEAL_II_WITH_THREADS successfully set up with bundled packages. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_1_zlib.cmake >> -- DEAL_II_WITH_ZLIB is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_2_metis.cmake >> -- DEAL_II_WITH_METIS is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_2_trilinos.cmake >> -- DEAL_II_WITH_TRILINOS is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_2_umfpack.cmake >> -- DEAL_II_WITH_UMFPACK is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_3_petsc.cmake >> -- DEAL_II_WITH_PETSC is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_adolc.cmake >> -- DEAL_II_WITH_ADOLC is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_arpack.cmake >> -- DEAL_II_WITH_ARPACK is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_assimp.cmake >> -- DEAL_II_WITH_ASSIMP is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_boost.cmake >> -- Could NOT find Boost >> -- BOOST_LIBRARIES: *** Required variable "Boost_LIBRARIES" empty *** >> -- BOOST_INCLUDE_DIRS: /usr/include >> -- BOOST_USER_INCLUDE_DIRS: /usr/include >> -- Could NOT find BOOST >> -- DEAL_II_WITH_BOOST has unmet external dependencies. >> -- DEAL_II_WITH_BOOST successfully set up with bundled packages. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_gmsh.cmake >> -- DEAL_II_WITH_GMSH is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_gsl.cmake >> -- DEAL_II_WITH_GSL is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_hdf5.cmake >> -- DEAL_II_WITH_HDF5 is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_muparser.cmake >> -- MUPARSER_LIBRARY not found! Call: >> -- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS >> PATH_SUFFIXES lib lib64 lib) >> -- MUPARSER_INCLUDE_DIR not found! Call: >> -- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES >> include) >> -- MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to >> NOTFOUND *** >> -- MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR" >> set to NOTFOUND *** >> -- Could NOT find MUPARSER >> -- DEAL_II_WITH_MUPARSER has unmet external dependencies. >> -- DEAL_II_WITH_MUPARSER successfully set up with bundled packages. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_nanoflann.cmake >> -- DEAL_II_WITH_NANOFLANN is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_netcdf.cmake >> -- DEAL_II_WITH_NETCDF is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_opencascade.cmake >> -- DEAL_II_WITH_OPENCASCADE is set to off. >> -- >> -- Include /home/leslie/dealii/cmake/configure/configure_p4est.cmake >> -- SC_INCLUDE_DIR not found! Call: >> -- FIND_PATH(SC_INCLUDE_DIR sc.h HINTS /FAST /DEBUG >> /home/leslie/App/p4estone/p4est/FAST /home/leslie/App/p4estone/p4est/DEBUG >> /home/leslie/App/p4estone/p4est PATH_SUFFIXES sc include/p4est include src >> sc/src) >> -- P4EST_LIBRARY_OPTIMIZED not found! Call: >> -- FIND_LIBRARY(P4EST_LIBRARY_OPTIMIZED NAMES p4est HINTS >> /home/leslie/App/p4estone/p4est/FAST /home/leslie/App/p4estone/p4est/DEBUG >> /home/leslie/App/p4estone/p4est PATH_SUFFIXES lib lib64 lib src) >> -- SC_LIBRARY_OPTIMIZED not found! Call: >> -- FIND_LIBRARY(SC_LIBRARY_OPTIMIZED NAMES sc HINTS /FAST /DEBUG >> /home/leslie/App/p4estone/p4est/FAST /home/leslie/App/p4estone/p4est/DEBUG >> /home/leslie/App/p4estone/p4est PATH_SUFFIXES lib lib64 lib src sc/src) >> -- P4EST_LIBRARY_DEBUG not found! Call: >> -- FIND_LIBRARY(P4EST_LIBRARY_DEBUG NAMES p4est HINTS >> /home/leslie/App/p4estone/p4est/DEBUG PATH_SUFFIXES lib lib64 lib src) >> -- SC_LIBRARY_DEBUG not found! Call: >> -- FIND_LIBRARY(SC_LIBRARY_DEBUG NAMES sc HINTS /DEBUG >> /home/leslie/App/p4estone/p4est/DEBUG PATH_SUFFIXES lib lib64 lib src >> sc/src) >> -- P4EST_INCLUDE_DIR not found! Call: >> -- FIND_PATH(P4EST_INCLUDE_DIR p4est_config.h HINTS >> /home/leslie/App/p4estone/p4est/FAST /home/leslie/App/p4estone/p4est/DEBUG >> /home/leslie/App/p4estone/p4est PATH_SUFFIXES p4est include/p4est include >> src) >> -- P4EST_LIBRARIES: *** Required variable "P4EST_LIBRARY_OPTIMIZED" set >> to NOTFOUND *** >> -- P4EST_INCLUDE_DIRS: *** Required variable "P4EST_INCLUDE_DIR" set to >> NOTFOUND *** >> -- P4EST_USER_INCLUDE_DIRS: *** Required variable "P4EST_INCLUDE_DIR" >> set to NOTFOUND *** >> -- Could NOT find P4EST >> -- DEAL_II_WITH_P4EST has unmet external dependencies. >> CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE): >> >> >> Could not find the p4est library! >> >> Please ensure that a suitable p4est library is installed on your >> computer. >> >> If the library is not at a default location, either provide some hints >> for >> autodetection, >> >> $ P4EST_DIR="..." cmake <...> >> $ cmake -DP4EST_DIR="..." <...> >> >> or set the relevant variables by hand in ccmake. >> >> Call Stack (most recent call first): >> cmake/macros/macro_configure_feature.cmake:269 (FEATURE_ERROR_MESSAGE) >> cmake/configure/configure_p4est.cmake:78 (CONFIGURE_FEATURE) >> cmake/macros/macro_verbose_include.cmake:19 (INCLUDE) >> CMakeLists.txt:124 (VERBOSE_INCLUDE) >> >> >> -- Configuring incomplete, errors occurred! >> See also "/home/leslie/dealii/build/CMakeFiles/CMakeOutput.log". >> See also "/home/leslie/dealii/build/CMakeFiles/CMakeError.log". >> >> >> Many thanks for your help again! >> >> Best >> >> On Monday, December 11, 2017 at 5:26:50 PM UTC+1, Bruno Turcksin wrote: >>> >>> Yaakov, >>> >>> 2017-12-11 11:00 GMT-05:00 <fea...@gmail.com>: >>> >>>> >>>> for mpi installation. I only use command : *sudo apt-get install mpich* >>>> >>> Yet you have openmpi installed: >>> >>>> >>>> -- Found MPI_MPI_H >>>> -- MPI_VERSION: 3.1 >>>> -- MPI_LIBRARIES: >>>> /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_mpifh.so;/usr/lib/libmpi.so;/usr/lib/libmpi.so >>>> -- MPI_INCLUDE_DIRS: >>>> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include >>>> -- MPI_USER_INCLUDE_DIRS: >>>> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include >>>> >>> So either you need to reconfigure deal.II in a clean directory or don't >>> install mpich. I know that some packages in ubuntu pull openmpi when you >>> install them. So if you have installed one of this package and you install >>> mpich, you have both openmpi and mpich installed. >>> >>> Best, >>> >>> Bruno >>> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to a topic in the >> Google Groups "deal.II User Group" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/dealii/cFkUlyd3Vow/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> dealii+un...@googlegroups.com <javascript:>. >> For more options, visit https://groups.google.com/d/optout. >> > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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