Thanks again,
Now it passes the *interpolate_boundary_values *call. However, it is
conflicting now with:
MatrixTools::apply_boundary_values (bval,
system_matrix,
solution,
system_rhs);
To be precise I write the output below.
Thanks in advance,
Juan Carlos Araújo, Umeå University
--------------------------------------------------------
An error occurred in line <70> of file
</mypath/Soft/dealii/source/numerics/matrix_tools_once.cc> in function
void dealii::MatrixTools::apply_boundary_values(const std::map<unsigned
int, std::complex<double> >&, dealii::PETScWrappers::MatrixBase&,
dealii::PETScWrappers::VectorBase&, dealii::PETScWrappers::VectorBase&,
bool)
The violated condition was:
eliminate_columns == false
Additional information:
You are trying to use functionality in deal.II that is currently not
implemented. In many cases, this indicates that there simply didn't appear
much of a need for it, or that the author of the original code did not have
the time to implement a particular case. If you hit this exception, it is
therefore worth the time to look into the code to find out whether you may
be able to implement the missing functionality. If you do, please consider
providing a patch to the deal.II development sources (see the deal.II
website on how to contribute).
Stacktrace:
-----------
#0 /mypath/Soft/dealii/lib/libdeal_II.g.so.9.0.0-pre:
dealii::MatrixTools::apply_boundary_values(std::map<unsigned int,
std::complex<double>, std::less<unsigned int>,
std::allocator<std::pair<unsigned int const, std::complex<double> > > >
const&, dealii::PETScWrappers::MatrixBase&,
dealii::PETScWrappers::VectorBase&, dealii::PETScWrappers::VectorBase&,
bool)
#1 ./pFEM: Adaptive::LaplaceProblem<2>::assemble_system()
#2 ./pFEM: Adaptive::LaplaceProblem<2>::run()
#3 ./pFEM: main
--------------------------------------------------------
[jc-umit:02419] *** Process received signal ***
[jc-umit:02419] Signal: Aborted (6)
[jc-umit:02419] Signal code: (-6)
[jc-umit:02419] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36cb0)
[0x7f80d19efcb0]
[jc-umit:02419] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37)
[0x7f80d19efc37]
[jc-umit:02419] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x148)
[0x7f80d19f3028]
[jc-umit:02419] [ 3]
/mypath/Soft/dealii/lib/libdeal_II.g.so.9.0.0-pre(+0x8047862)
[0x7f80da96e862]
[jc-umit:02419] [ 4]
/mypath/Soft/dealii/lib/libdeal_II.g.so.9.0.0-pre(_ZN6dealii18deal_II_exceptions9internals5abortERKNS_13ExceptionBaseE+0x1a)
[0x7f80da96fe81]
[jc-umit:02419] [ 5]
/mypath/Soft/dealii/lib/libdeal_II.g.so.9.0.0-pre(_ZN6dealii18deal_II_exceptions9internals11issue_errorINS_18StandardExceptions17ExcNotImplementedEEEvNS1_17ExceptionHandlingEPKciS7_S7_S7_T_+0x4e)
[0x7f80d5454e7e]
[jc-umit:02419] [ 6]
/mypath/Soft/dealii/lib/libdeal_II.g.so.9.0.0-pre(_ZN6dealii11MatrixTools21apply_boundary_valuesERKSt3mapIjSt7complexIdESt4lessIjESaISt4pairIKjS3_EEERNS_13PETScWrappers10MatrixBaseERNSD_10VectorBaseESH_b+0xc2)
[0x7f80d54cedf6]
[jc-umit:02419] [ 7]
./pFEM(_ZN8Adaptive14LaplaceProblemILi2EE15assemble_systemEv+0xb47)
[0x43a137]
[jc-umit:02419] [ 8] ./pFEM(_ZN8Adaptive14LaplaceProblemILi2EE3runEv+0x126)
[0x43ce44]
[jc-umit:02419] [ 9] ./pFEM(main+0xdf) [0x427610]
[jc-umit:02419] [10]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7f80d19daf45]
[jc-umit:02419] [11] ./pFEM() [0x427419]
[jc-umit:02419] *** End of error message ***
Aborted (core dumped)
El viernes, 8 de diciembre de 2017, 13:07:28 (UTC-5), Wolfgang Bangerth
escribió:
>
>
> > Merge: fd97710 cceeb7c
> > Author: Wolfgang Bangerth <bangerth@**.**>
> > Date: Tue Dec 5 07:24:15 2017 -0700
> >
> > Merge pull request #5579 from bangerth/more-complex-instantiations
> >
> > More complex instantiations
> >
> >
> > However, after configuration, installation and compilation of my code I
> > obtain the error:
> >
> > Scanning dependencies of target pFEM
> > [100%] Building CXX object CMakeFiles/pFEM.dir/pFEM.cc.o
> > Linking CXX executable pFEM
> > /mypath/pFEM.cc:370: error: undefined reference to 'void
> > dealii::VectorTools::interpolate_boundary_values<2, 2,
> > std::complex<double> >(dealii::hp::MappingCollection<2, 2> const&,
> > dealii::hp::DoFHandler<2, 2> const&, std::map<unsigned int,
> > dealii::Function<2, std::complex<double> > const*, std::less<unsigned
> > int>, std::allocator<std::pair<unsigned int const, dealii::Function<2,
> > std::complex<double> > const*> > > const&, std::map<unsigned int,
> > std::complex<double>, std::less<unsigned int>,
> > std::allocator<std::pair<unsigned int const, std::complex<double> > >
> > >&, dealii::ComponentMask const&)'
>
> Yes, I apparently forgot to instantiate this one function as well. Patch
> is here:
> https://github.com/dealii/dealii/pull/5602
> It was just merged.
>
> Best
> W.
>
> --
> ------------------------------------------------------------------------
> Wolfgang Bangerth email: bang...@colostate.edu
> <javascript:>
> www: http://www.math.colostate.edu/~bangerth/
>
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