Ok, this was my error. I thought you guys picked u the compiler flags from Trilinos, but turns out I specify them. If I add the AVX instructions to the debug flags (which I don't like!) it compiles fine. Until here:
make -f examples/CMakeFiles/step-53.release.dir/build.make examples/ CMakeFiles/step-53.release.dir/build make[2]: Entering directory `/tmp/dealii-build' [ 84%] Linking CXX executable ../bin/step-53.release cd /tmp/dealii-build/examples && /opt/apps/cmake/3.8.2/bin/cmake -E cmake_link_script CMakeFiles/step-53.release.dir/link.txt --verbose=2 /opt/intel/compilers_and_libraries_2017.4.196/linux/mpi/intel64/bin/mpicxx -rdynamic -Wl,--as-needed -shared-intel -rdynamic -qopenmp -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /opt/intel/compilers_and_libraries_2017\ .4.196/linux/mpi/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/compilers_and_libraries_2017.4.196/linux/mpi/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlin\ ker /opt/intel/mpi-rt/2017.0.0/intel64/lib CMakeFiles/step-53.release.dir/step-53/step-53.cc.o -o ../bin/step-53.release -Wl,-rpath,/tmp/dealii-build/lib:/home1/apps/intel17/impi17_0/trilinos/12.10.1/lib:/opt/apps/intel17/boost\ /1.64/lib:/opt/apps/intel17/impi17_0/parallel-netcdf/4.3.3.1/x86_64/lib:/opt/apps/intel17/python/2.7.13/lib:/home1/apps/intel17/impi17_0/p4est/2.0/lib:/home1/apps/intel17/impi17_0/slepc/3.7/knightslanding/lib:/home1/apps/intel17/\ impi17_0/petsc/3.7/knightslanding/lib:/opt/apps/intel17/impi17_0/phdf5/1.8.16/x86_64/lib: ../lib/libdeal_II.so.9.0.0-pre -lbz2 /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libpytrilinos.so /home1/apps/intel17/impi17_0/trilin\ os/12.10.1/lib/libstokhos_muelu.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstokhos_ifpack2.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstokhos_amesos2.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/\ libstokhos_tpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstokhos_sacado.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstokhos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libmoochothyra.so /home\ 1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libmoocho.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/librythmos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libmuelu-adapters.so /home1/apps/intel17/impi17_0/trilino\ s/12.10.1/lib/libmuelu-interface.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libmuelu.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/liblocathyra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/liblocaepetra.s\ o /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/liblocalapack.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libloca.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libnoxepetra.so /home1/apps/intel17/impi17_0/tril\ inos/12.10.1/lib/libnoxlapack.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libnox.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libphalanx.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_expreval.so /ho\ me1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_mesh_fixtures.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_search_util_base.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_search.so /home1/apps/in\ tel17/impi17_0/trilinos/12.10.1/lib/libstk_unit_test_utils.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_io_util.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_io.so /home1/apps/intel17/impi17_0/trilino\ s/12.10.1/lib/libstk_mesh_base.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_topology.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_util_use_cases.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/l\ ibstk_util_registry.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_util_parallel.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_util_diag.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_util_\ env.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstk_util_util.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_search_util.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_search.so\ /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_rebalance_utils.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_rebalance.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_io_u\ til.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_io.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_expreval.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_algsup.so /h\ ome1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_mesh_fem.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_mesh_base.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_util_unit_test\ _support.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_util_parallel.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_util_diag.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkcla\ ssic_util_env.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstkclassic_util_util.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libintrepid.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteko.so /home1/ap\ ps/intel17/impi17_0/trilinos/12.10.1/lib/libstratimikos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstratimikosbelos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstratimikosaztecoo.so /home1/apps/intel17/im\ pi17_0/trilinos/12.10.1/lib/libstratimikosamesos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstratimikosml.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libstratimikosifpack.so /home1/apps/intel17/impi17_0/tril\ inos/12.10.1/lib/libifpack2-adapters.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libifpack2.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libanasazitpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libMo\ deLaplace.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libanasaziepetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libanasazi.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libkomplex.so /home1/apps/intel1\ 7/impi17_0/trilinos/12.10.1/lib/libmapvarlib.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libfastqlib.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libblotlib.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libp\ lt.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsvdi_cgi.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsvdi_cdr.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsuplib_cpp.so /home1/apps/intel17/impi17_0/\ trilinos/12.10.1/lib/libsuplib_c.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsuplib.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsupes.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libaprepro_lib.so \ /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libchaco.a /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libio_info_lib.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIonit.so /home1/apps/intel17/impi17_0/trilinos/\ 12.10.1/lib/libIotr.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIohb.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIogn.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIopg.so /home1/apps/intel17/imp\ i17_0/trilinos/12.10.1/lib/libIoexo_fac.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIofx.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIoex.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libIoss.so /ho\ me1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libnemesis.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libexoIIv2for32.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libexodus_for.so /home1/apps/intel17/impi17_0/tri\ linos/12.10.1/lib/libexodus.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libamesos2.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libshylu.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libbelostpetra.so /hom\ e1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libbelosepetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libbelos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libml.so /home1/apps/intel17/impi17_0/trilinos/12.10.\ 1/lib/libifpack.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libzoltan2.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libpamgen_extras.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libpamgen.so /home1/apps/i\ ntel17/impi17_0/trilinos/12.10.1/lib/libamesos.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libgaleri-xpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libgaleri-epetra.so /home1/apps/intel17/impi17_0/trilinos/1\ 2.10.1/lib/libaztecoo.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libdpliris.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libisorropia.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libxpetra-sup.so /home1/\ apps/intel17/impi17_0/trilinos/12.10.1/lib/libxpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libthyratpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libthyraepetraext.so /home1/apps/intel17/impi17_0/trili\ nos/12.10.1/lib/libthyraepetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libthyracore.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libepetraext.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtpetraext.\ so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtpetrainout.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtpetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libkokkostsqr.so /home1/apps/intel17/impi17_0\ /trilinos/12.10.1/lib/libtpetrakernels.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtpetraclassiclinalg.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtpetraclassicnodeapi.so /home1/apps/intel17/impi17_0/trili\ nos/12.10.1/lib/libtpetraclassic.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libtriutils.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libshards.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libzoltan.so /h\ ome1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libepetra.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libsacado.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/librtop.so /home1/apps/intel17/impi17_0/trilinos/12.10.\ 1/lib/libteuchoskokkoscomm.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteuchoskokkoscompat.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteuchosremainder.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/\ libteuchosnumerics.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteuchoscomm.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteuchosparameterlist.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libteuchosco\ re.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libkokkosalgorithms.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libkokkoscontainers.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libkokkoscore.so /home1/app\ s/intel17/impi17_0/trilinos/12.10.1/lib/libtpi.so /home1/apps/intel17/impi17_0/trilinos/12.10.1/lib/libgtest.so /opt/apps/intel17/boost/1.64/lib/libboost_program_options.so -lX11 /opt/apps/intel17/impi17_0/parallel-netcdf/4.3.3.1\ /x86_64/lib/libnetcdf.so -lz /opt/apps/intel17/python/2.7.13/lib/libpython2.7.so /opt/apps/intel17/boost/1.64/lib/libboost_iostreams.so /opt/apps/intel17/boost/1.64/lib/libboost_serialization.so /opt/apps/intel17/boost/1.64/lib/l\ ibboost_system.so /opt/apps/intel17/boost/1.64/lib/libboost_thread.so /opt/apps/intel17/boost/1.64/lib/libboost_regex.so /opt/apps/intel17/boost/1.64/lib/libboost_chrono.so /opt/apps/intel17/boost/1.64/lib/libboost_date_time.so /\ opt/apps/intel17/boost/1.64/lib/libboost_atomic.so /home1/apps/intel17/impi17_0/p4est/2.0/lib/libp4est.so /home1/apps/intel17/impi17_0/p4est/2.0/lib/libsc.so -lm -lmkl_intel_thread /opt/intel/compilers_and_libraries/linux/lib/int\el64/libiomp5.so -lmpifort -lmpi -lmpigi -lifcoremt -limf -lipgo -lirc -lsvml -lirc_s -lc /home1/apps/intel17/impi17_0/slepc/3.7/knightslanding/lib/libslepc.so /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libpetsc.so\ /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libsuperlu_dist.so /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libcmumps.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libdmumps.a /home1/apps\ /intel17/impi17_0/petsc/3.7/knightslanding/lib/libsmumps.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libzmumps.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libmumps_common.a /home1/apps/intel17/impi\ 17_0/petsc/3.7/knightslanding/lib/libpord.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libparmetis.so /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libmetis.so /home1/apps/intel17/impi17_0/petsc/3.7/kni\ ghtslanding/lib/libsuperlu.so /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libHYPRE.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libscalapack.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib\ /libumfpack.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libklu.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libcholmod.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libbtf.a /home1/app\ s/intel17/impi17_0/petsc/3.7/knightslanding/lib/libccolamd.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libcolamd.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libcamd.a /home1/apps/intel17/impi17_0/p\ etsc/3.7/knightslanding/lib/libamd.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libsuitesparseconfig.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libspai.a /home1/apps/intel17/impi17_0/petsc/3.7/knig\ htslanding/lib/libsundials_cvode.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libsundials_nvecserial.a /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libsundials_nvecparallel.a -lmkl_intel_lp64 -lmkl_seq\ uential -lmkl_core -lhwloc /opt/apps/intel17/impi17_0/phdf5/1.8.16/x86_64/lib/libhdf5hl_fortran.so /opt/apps/intel17/impi17_0/phdf5/1.8.16/x86_64/lib/libhdf5_fortran.so /opt/apps/intel17/impi17_0/phdf5/1.8.16/x86_64/lib/libhdf5_h\ l.so /opt/apps/intel17/impi17_0/phdf5/1.8.16/x86_64/lib/libhdf5.so -lssl -lcrypto /home1/apps/intel17/impi17_0/petsc/3.7/knightslanding/lib/libchaco.a -lifport -Wl,-Bstatic -lifcoremt_pic -Wl,-Bdynamic -lmpicxx -lmpifort -lmpi -W\ l,-Bstatic -lmpigi -Wl,-Bdynamic -lrt -lpthread -limf -lsvml -lirng -lm -Wl,-Bstatic -lipgo -ldecimal -Wl,-Bdynamic -lcilkrts -lirc -Wl,-Bstatic -lirc_s -Wl,-Bdynamic -ldl CMakeFiles/step-53.release.dir/step-53/step-53.cc.o: In function `Step53:: AfricaTopography::get_data()': step-53.cc:(.text+0x1ac9): undefined reference to `boost::iostreams::zlib::default_strategy' step-53.cc:(.text+0x1b28): undefined reference to `boost::iostreams::zlib::default_compression' step-53.cc:(.text+0x1b2f): undefined reference to `boost::iostreams::zlib:: deflated' step-53.cc:(.text+0x1d2b): undefined reference to `boost::iostreams::detail::zlib_base::zlib_base()' step-53.cc:(.text+0x1d49): undefined reference to `boost::iostreams::detail::zlib_base::do_init(boost::iostreams::zlib_params const&, bool, void* (*)(void*, unsigned int, unsigned int), void (*)(void*, void*), void*)' step-53.cc:(.text+0x1e4d): undefined reference to `boost::iostreams::detail ::gzip_header::reset()' step-53.cc:(.text+0x1e5a): undefined reference to `boost::iostreams::detail::gzip_footer::reset()' step-53.cc:(.text+0x261a): undefined reference to `boost::iostreams::detail::zlib_base::~zlib_base()' CMakeFiles/step-53.release.dir/step-53/step-53.cc.o: In function `boost:: iostreams::detail::zlib_decompressor_impl<std::allocator<char> >::~ zlib_decompressor_impl()': step-53.cc:(.text._ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev[_ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev]+0xd): undefined reference to `boost::iostreams::detail::zlib_base::reset(bool, bool)' step-53.cc:(.text. _ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev[ _ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev]+0x15): undefined reference to `boost::iostreams::detail::zlib_base::~zlib_base()' step-53.cc:(.text._ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev[_ZN5boost9iostreams6detail22zlib_decompressor_implISaIcEED1Ev]+0x3f): undefined reference to `boost::iostreams::detail::zlib_base::~zlib_base()' CMakeFiles/step-53.release.dir/step-53/step-53.cc.o: In function `boost::iostreams::detail::indirect_streambuf<boost::iostreams::basic_gzip_decompressor<std::allocator<char> >, std::char_traits<char>, std::allocator<char>, boost:\ :iostreams::input>::strict_sync()': step-53.cc:(.text. _ZN5boost9iostreams6detail18indirect_streambufINS0_23basic_gzip_decompressorISaIcEEESt11char_traitsIcES4_NS0_5inputEE11strict_syncEv [ _ZN5boost9iostreams6detail18indirect_streambufINS0_23basic_gzip_decompressorIS \ aIcEEESt11char_traitsIcES4_NS0_5inputEE11strict_syncEv]+0x76): undefined reference to `boost::iostreams::zlib::sync_flush' Et cetera. We have boost 1.64. Any idea? Victor. -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
