Hi Luca!
I have tried and I do not know what I am missing. I have a makefile like
this
all: build
build:
docker build -t new-dealii .
and the Dockerfile as follows
$ more Dockerfile
#Dockerfile
FROM dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-debugrelease
RUN apt-get update
RUN apt-get install -y vim python-pip
RUN pip install --user numpy matplotlib
Then I try to build and I get the same problem
$ make build
docker build -t new-dealii .
Sending build context to Docker daemon 3.072 kB
Step 1 : FROM dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-debugrelease
---> 7e9675ba5e1e
Step 2 : RUN apt-get update
---> Running in d2f2083b9e3f
W: chmod 0700 of directory /var/lib/apt/lists/partial failed -
SetupAPTPartialDirectory (1: Operation not permitted)
E: Could not open lock file /var/lib/apt/lists/lock - open (13: Permission
denied)
E: Unable to lock directory /var/lib/apt/lists/
E: Could not open lock file /var/lib/dpkg/lock - open (13: Permission
denied)
E: Unable to lock the administration directory (/var/lib/dpkg/), are you
root?
The command '/bin/sh -c apt-get update' returned a non-zero code: 100
Makefile:4: recipe for target 'build' failed
make: *** [build] Error 100
Should I choose a different dealii container, or do you suggest that I
should create the container from scratch (downloading the dealii, petsc,
and so on and installing?
Thanks!
Sebas.
El lunes, 20 de febrero de 2017, 12:35:50 (UTC+1), Luca Heltai escribió:
>
> Yes.
>
> You should write a Dockefile with your instructions. See, for example, the
> Dockefile for deal2lkit (github).
>
> Luca
>
> On 20 Feb 2017, at 11:58, Sebastian.Gonzalez-Pintor <sego...@gmail.com
> <javascript:>> wrote:
>
>
> Hello!
>
> I am trying with the docker containers of dealii, so I downloaded one of
> them and then I ran it
>
> $ docker pull dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-debugrelease
> $ docker run -i -t dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-
> debugrelease
>
> Now I want to install few things in the container that I uses to run my
> program, like `vim`, or like `numpy`,
>
> dealii@a7af5de839fc:~$ apt-get install vim python-numpy
> E: Could not open lock file /var/lib/dpkg/lock - open (13: Permission
> denied)
> E: Unable to lock the administration directory (/var/lib/dpkg/), are you
> root?
>
> and I found that I cannot install it because I am not root. Then, I can
> just go out and enter as root:
>
> $ docker run -u 0 -i -t
> dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-debugrelease
> root@89620dceb35a:~# apt-get install vim
> root@89620dceb35a:~# apt-get install python-pip
> root@89620dceb35a:~# pip install --user numpy matplotlib
>
> But know I want to commit this session in order to use it later with these
> packages and other ones, so from a different terminal I identify the
> running image and commit it
>
> $ docker ps
> CONTAINER ID IMAGE
> COMMAND CREATED STATUS PORTS
> NAMES
> 89620dceb35a
> dealii/dealii:v8.4.2-gcc-mpi-fulldepsmanual-debugrelease "/bin/bash"
> 5 minutes ago Up 5 minutes sharp_liskov
> $ docker commit 89620dceb35a dealii/dealii-and-numpy
>
>
> The problem is that when I save it, then it is saved as superuser, and I
> cannot go back to normal user mode...
>
> Any work-around?
>
> --
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