Hello,
I was wondering if anyone could help pinpoint any anomaly with my p4est and
dealii integration.
I was able to successfully install Petsc and run its own tests using my
already installed mpich.
Next, I installed p4est which also seemed to install without problems.
Then dealii which also did not give me any problems.
I could not find any topics relating to this error. I'd be grateful if
anyone could help solve this issue. Following is more information about my
installations.
The problem came when I ran the following command after dealii installation
$ make test
The attachments:
detailed.log -- dealii
config.log -- p4est build directory
Here is the output from the terminal:
********************************************************************************************************************************************
ubuntu@dulcet:~/software/dealii-8.4.1/build$ make test
Scanning dependencies of target test
[100%] Running quicktests...
Test project /home/ubuntu/software/dealii-8.4.1/build/tests/quick_tests
Start 1: step.debug
1/7 Test #1: step.debug ....................... Passed 20.28 sec
Start 2: step.release
2/7 Test #2: step.release ..................... Passed 17.81 sec
Start 3: affinity.debug
3/7 Test #3: affinity.debug ................... Passed 12.33 sec
Start 4: mpi.debug
4/7 Test #4: mpi.debug ........................ Passed 12.67 sec
Start 5: tbb.debug
5/7 Test #5: tbb.debug ........................ Passed 11.19 sec
Start 6: p4est.debug
6/7 Test #6: p4est.debug ......................***Failed 17.08 sec
Test p4est.debug: RUN
=============================== OUTPUT BEGIN
===============================
Scanning dependencies of target kill-p4est.debug-OK
[ 0%] Built target kill-p4est.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 1%] Built target obj_opencascade.debug
[ 6%] Built target obj_boost_serialization.debug
[ 6%] Built target obj_boost_system.debug
[ 13%] Built target obj_tbb.debug
[ 15%] Built target obj_muparser.debug
[ 20%] Built target obj_numerics.inst
[ 28%] Built target obj_numerics.debug
[ 37%] Built target obj_fe.inst
[ 47%] Built target obj_fe.debug
[ 49%] Built target obj_dofs.inst
[ 52%] Built target obj_dofs.debug
[ 55%] Built target obj_lac.inst
[ 66%] Built target obj_lac.debug
[ 67%] Built target obj_base.inst
[ 79%] Built target obj_base.debug
[ 83%] Built target obj_grid.inst
[ 86%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target p4est.debug
[100%] Building CXX object
tests/quick_tests/CMakeFiles/p4est.debug.dir/p4est.cc.o
Linking CXX executable p4est.debug
[100%] Built target p4est.debug
Scanning dependencies of target p4est.debug.run
p4est.debug: RUN failed. Output:
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
make[7]: *** [tests/quick_tests/CMakeFiles/p4est.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/p4est.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/p4est.debug.run.dir/rule] Error 2
make[4]: *** [p4est.debug.run] Error 2
p4est.debug: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at
/home/ubuntu/software/dealii-8.4.1/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 7: step-petsc.debug
Errors while running CTest
7/7 Test #7: step-petsc.debug ................. Passed 16.50 sec
86% tests passed, 1 tests failed out of 7
Total Test time (real) = 107.88 sec
The following tests FAILED:
6 - p4est.debug (Failed)
******************************* WARNING
*******************************
Some of the tests failed!
Please scroll up or check the file tests/quick_tests/quicktests.log for the
error messages. If you are unable to fix the problems, see the FAQ or write
to the mailing list linked at http://www.dealii.org
The p4est test can fail if you are running an OpenMPI version before 1.5.
This is a known problem and the only work around is to update to a more
recent version or use a different MPI library like MPICH.
Built target test
********************************************************************************************************************************************
Thank you for your help.
Regards,
Kartik Jujare
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by p4est configure 1.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ /home/ubuntu/software/p4est/p4est-1.1/configure --enable-mpi
--enable-shared --disable-vtk-binary --without-blas --disable-mpithread
--prefix=/home/ubuntu/programfiles/p4est//FAST CFLAGS=-O2
CPPFLAGS=-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL -DP4EST_BACKWARD_DEALII
## --------- ##
## Platform. ##
## --------- ##
hostname = dulcet
uname -m = x86_64
uname -r = 3.13.0-62-generic
uname -s = Linux
uname -v = #102-Ubuntu SMP Tue Aug 11 14:29:36 UTC 2015
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /home/ubuntu/programfiles/mpich/bin
PATH: /home/ubuntu/programfiles/mpich/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2703: checking for a BSD-compatible install
configure:2771: result: /usr/bin/install -c
configure:2782: checking whether build environment is sane
configure:2837: result: yes
configure:2988: checking for a thread-safe mkdir -p
configure:3027: result: /bin/mkdir -p
configure:3034: checking for gawk
configure:3050: found /usr/bin/gawk
configure:3061: result: gawk
configure:3072: checking whether make sets $(MAKE)
configure:3094: result: yes
configure:3123: checking whether make supports nested variables
configure:3140: result: yes
configure:3276: checking whether make supports nested variables
configure:3293: result: yes
configure:3304: checking for a sed that does not truncate output
configure:3368: result: /bin/sed
configure:3379: checking Major version
configure:3381: result: 1
configure:3383: checking Minor version
configure:3385: result: 1
configure:3387: checking Point version
configure:3389: result: 1.1
configure:3622: checking whether we are using MPI
configure:3624: result: yes
configure:3641: checking whether we are using MPI I/O
configure:3643: result: yes
configure:3660: checking whether we are using MPI_Init_thread
configure:3662: result: no
configure:3672: checking for mpiexec
configure:3688: found /home/ubuntu/programfiles/mpich/bin/mpiexec
configure:3699: result: mpiexec
configure:3736: F77 set to mpif77
configure:3743: FC set to mpif90
configure:3749: CC set to mpicc
configure:3755: CXX set to mpicxx
configure:4008: checking for Fortran 77 compiler version
configure:4017: mpif77 --version >&5
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
Copyright (C) 2013 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
configure:4028: $? = 0
configure:4017: mpif77 -v >&5
mpifort for MPICH version 3.2
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.8.4-2ubuntu1~14.04.3' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.8 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
configure:4028: $? = 0
configure:4017: mpif77 -V >&5
gfortran: error: unrecognized command line option '-V'
configure:4028: $? = 1
configure:4017: mpif77 -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
configure:4028: $? = 1
configure:4043: checking whether the Fortran 77 compiler works
configure:4065: mpif77 conftest.f >&5
configure:4069: $? = 0
configure:4117: result: yes
configure:4120: checking for Fortran 77 compiler default output file name
configure:4122: result: a.out
configure:4128: checking for suffix of executables
configure:4135: mpif77 -o conftest conftest.f >&5
configure:4139: $? = 0
configure:4161: result:
configure:4177: checking whether we are cross compiling
configure:4185: mpif77 -o conftest conftest.f >&5
configure:4189: $? = 0
configure:4196: ./conftest
configure:4200: $? = 0
configure:4215: result: no
configure:4220: checking for suffix of object files
configure:4236: mpif77 -c conftest.f >&5
configure:4240: $? = 0
configure:4261: result: o
configure:4269: checking whether we are using the GNU Fortran 77 compiler
configure:4282: mpif77 -c conftest.F >&5
configure:4282: $? = 0
configure:4291: result: yes
configure:4297: checking whether mpif77 accepts -g
configure:4308: mpif77 -c -g conftest.f >&5
configure:4308: $? = 0
configure:4316: result: yes
configure:4349: checking build system type
configure:4363: result: x86_64-unknown-linux-gnu
configure:4383: checking host system type
configure:4396: result: x86_64-unknown-linux-gnu
configure:4421: checking how to get verbose linking output from mpif77
configure:4431: mpif77 -c -g -O2 conftest.f >&5
configure:4431: $? = 0
configure:4449: mpif77 -o conftest -g -O2 -v conftest.f
mpifort for MPICH version 3.2
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
/usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I
/home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include -quiet -dumpbase conftest.f
-mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version
-fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o
/tmp/ccPxW1ZT.s
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I /home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include --64 -o /tmp/ccuTrKWv.o /tmp/ccPxW1ZT.s
GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils
for Ubuntu) 2.24
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id
--eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -z relro -o conftest
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/ccuTrKWv.o -lmpifort -rpath
/home/ubuntu/programfiles/mpich/lib --enable-new-dtags -lmpi -lgfortran -lm
-lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o
configure:4532: result: -v
configure:4534: checking for Fortran 77 libraries of mpif77
configure:4557: mpif77 -o conftest -g -O2 -v conftest.f
mpifort for MPICH version 3.2
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
/usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I
/home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include -quiet -dumpbase conftest.f
-mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version
-fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o
/tmp/ccM2hMVY.s
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I /home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include --64 -o /tmp/ccFEXN3A.o /tmp/ccM2hMVY.s
GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils
for Ubuntu) 2.24
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id
--eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -z relro -o conftest
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/ccFEXN3A.o -lmpifort -rpath
/home/ubuntu/programfiles/mpich/lib --enable-new-dtags -lmpi -lgfortran -lm
-lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o
configure:4753: result: -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath
configure:4776: checking for style of include used by make
configure:4804: result: GNU
configure:4875: checking for gcc
configure:4902: result: mpicc
configure:5131: checking for C compiler version
configure:5140: mpicc --version >&5
gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:5151: $? = 0
configure:5140: mpicc -v >&5
mpicc for MPICH version 3.2
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.8.4-2ubuntu1~14.04.3' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.8 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
configure:5151: $? = 0
configure:5140: mpicc -V >&5
gcc: error: unrecognized command line option '-V'
configure:5151: $? = 1
configure:5140: mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
configure:5151: $? = 1
configure:5155: checking whether we are using the GNU C compiler
configure:5182: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:5182: $? = 0
configure:5191: result: yes
configure:5200: checking whether mpicc accepts -g
configure:5228: mpicc -c -g -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:5228: $? = 0
configure:5285: result: yes
configure:5302: checking for mpicc option to accept ISO C89
configure:5373: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:5373: $? = 0
configure:5386: result: none needed
configure:5411: checking whether mpicc understands -c and -o together
configure:5441: mpicc -c conftest.c -o conftest2.o
configure:5444: $? = 0
configure:5441: mpicc -c conftest.c -o conftest2.o
configure:5444: $? = 0
configure:5456: result: yes
configure:5475: checking dependency style of mpicc
configure:5586: result: gcc3
configure:5607: checking for dummy main to link with Fortran 77 libraries
configure:5641: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:5641: $? = 0
configure:5686: result: none
configure:5719: checking for Fortran 77 name-mangling scheme
configure:5732: mpif77 -c -g -O2 conftest.f >&5
configure:5732: $? = 0
configure:5773: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
/tmp/cc6JdyZ7.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:5773: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return foobar ();
| ;
| return 0;
| }
configure:5773: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:5773: $? = 0
configure:5831: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:5831: $? = 0
configure:5873: result: lower case, underscore, no extra underscore
configure:5988: checking for Fortran compiler version
configure:5997: mpif90 --version >&5
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
Copyright (C) 2013 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
configure:6008: $? = 0
configure:5997: mpif90 -v >&5
mpifort for MPICH version 3.2
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.8.4-2ubuntu1~14.04.3' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.8 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
configure:6008: $? = 0
configure:5997: mpif90 -V >&5
gfortran: error: unrecognized command line option '-V'
configure:6008: $? = 1
configure:5997: mpif90 -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
configure:6008: $? = 1
configure:6017: checking whether we are using the GNU Fortran compiler
configure:6030: mpif90 -c conftest.F >&5
configure:6030: $? = 0
configure:6039: result: yes
configure:6045: checking whether mpif90 accepts -g
configure:6056: mpif90 -c -g conftest.f >&5
configure:6056: $? = 0
configure:6064: result: yes
configure:6098: checking how to get verbose linking output from mpif90
configure:6108: mpif90 -c -g -O2 conftest.f >&5
configure:6108: $? = 0
configure:6126: mpif90 -o conftest -g -O2 -v conftest.f
mpifort for MPICH version 3.2
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
/usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I
/home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include -quiet -dumpbase conftest.f
-mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version
-fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o
/tmp/ccsHi3NV.s
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I /home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include --64 -o /tmp/ccEoOd1z.o /tmp/ccsHi3NV.s
GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils
for Ubuntu) 2.24
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id
--eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -z relro -o conftest
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/ccEoOd1z.o -lmpifort -rpath
/home/ubuntu/programfiles/mpich/lib --enable-new-dtags -lmpi -lgfortran -lm
-lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o
configure:6209: result: -v
configure:6211: checking for Fortran libraries of mpif90
configure:6234: mpif90 -o conftest -g -O2 -v conftest.f
mpifort for MPICH version 3.2
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
/usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I
/home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include -quiet -dumpbase conftest.f
-mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version
-fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o
/tmp/ccQww9XS.s
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.3) version 4.8.4 (x86_64-linux-gnu)
compiled by GNU C version 4.8.4, GMP version 5.1.3, MPFR version
3.1.2-p3, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I /home/ubuntu/programfiles/mpich/include -I
/home/ubuntu/programfiles/mpich/include --64 -o /tmp/ccft9jqx.o /tmp/ccQww9XS.s
GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils
for Ubuntu) 2.24
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id
--eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -z relro -o conftest
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/ccft9jqx.o -lmpifort -rpath
/home/ubuntu/programfiles/mpich/lib --enable-new-dtags -lmpi -lgfortran -lm
-lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc
/usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o
configure:6430: result: -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath
configure:6446: checking for dummy main to link with Fortran libraries
configure:6488: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:6488: $? = 0
configure:6541: result: none
configure:6574: checking for Fortran name-mangling scheme
configure:6587: mpif90 -c -g -O2 conftest.f >&5
configure:6587: $? = 0
configure:6636: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
/tmp/ccebLPBN.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:6636: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return foobar ();
| ;
| return 0;
| }
configure:6636: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:6636: $? = 0
configure:6702: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c cfortran_test.o
-L/home/ubuntu/programfiles/mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath >&5
configure:6702: $? = 0
configure:6744: result: lower case, underscore, no extra underscore
configure:6866: checking for C++ compiler version
configure:6875: mpicxx --version >&5
g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:6886: $? = 0
configure:6875: mpicxx -v >&5
mpicxx for MPICH version 3.2
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.8.4-2ubuntu1~14.04.3' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.8 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.3)
configure:6886: $? = 0
configure:6875: mpicxx -V >&5
g++: error: unrecognized command line option '-V'
configure:6886: $? = 1
configure:6875: mpicxx -qversion >&5
g++: error: unrecognized command line option '-qversion'
configure:6886: $? = 1
configure:6890: checking whether we are using the GNU C++ compiler
configure:6925: mpicxx -c -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp >&5
configure:6925: $? = 0
configure:6934: result: yes
configure:6943: checking whether mpicxx accepts -g
configure:6979: mpicxx -c -g -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp >&5
configure:6979: $? = 0
configure:7052: result: yes
configure:7077: checking dependency style of mpicxx
configure:7188: result: gcc3
configure:7211: checking whether mpif77 understands -c and -o together
configure:7229: mpif77 -g -O2 -c conftest.f -o conftest2.o >&5
configure:7233: $? = 0
configure:7240: mpif77 -g -O2 -c conftest.f -o conftest2.o >&5
configure:7244: $? = 0
configure:7252: result: yes
configure:7331: checking whether mpif90 understands -c and -o together
configure:7349: mpif90 -g -O2 -c conftest.f -o conftest2.o >&5
configure:7353: $? = 0
configure:7360: mpif90 -g -O2 -c conftest.f -o conftest2.o >&5
configure:7364: $? = 0
configure:7372: result: yes
configure:7447: checking whether mpicc and cc understand -c and -o together
configure:7494: mpicc -c conftest.c -o conftest2.o >&5
configure:7498: $? = 0
configure:7504: mpicc -c conftest.c -o conftest2.o >&5
configure:7508: $? = 0
configure:7519: cc -c conftest.c >&5
configure:7523: $? = 0
configure:7531: cc -c conftest.c -o conftest2.o >&5
configure:7535: $? = 0
configure:7541: cc -c conftest.c -o conftest2.o >&5
configure:7545: $? = 0
configure:7563: result: yes
configure:7581: checking whether mpicxx understands -c and -o together
configure:7621: mpicxx -g -O2 -c conftest.cpp -o conftest2.o >&5
configure:7625: $? = 0
configure:7632: mpicxx -g -O2 -c conftest.cpp -o conftest2.o >&5
configure:7636: $? = 0
configure:7644: result: yes
configure:7661: checking compile/link for MPI C program
configure:7696: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:7696: $? = 0
configure:7697: result: successful
configure:7716: checking compile/link for MPI CXX program
configure:7753: mpicxx -o conftest -g -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp >&5
configure:7753: $? = 0
configure:7754: result: successful
configure:7774: checking compile/link for MPI I/O C program
configure:7814: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:7814: $? = 0
configure:7815: result: successful
configure:7886: Trying to determine MPI_INCLUDES
configure:7890: checking -showme:compile
configure:7899: result: Failed
configure:7890: checking -showme:incdirs
configure:7899: result: Failed
configure:7890: checking -showme
configure:7899: result: Failed
configure:7890: checking -show
configure:7893: result: Successful
configure:7906: Found MPI_INCLUDES -I/home/ubuntu/programfiles/mpich/include
configure:7912: Found MPI_INCLUDE_PATH
/home/ubuntu/programfiles/mpich/include
configure:7970: checking for ar
configure:7986: found /usr/bin/ar
configure:7997: result: ar
configure:8023: checking the archiver (ar) interface
configure:8039: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:8039: $? = 0
configure:8041: ar cru libconftest.a conftest.o >&5
configure:8044: $? = 0
configure:8072: result: ar
configure:8109: checking for splint
configure:8140: result: no
configure:8149: WARNING: Static source code checker splint not found
configure:8204: checking whether the C compiler accepts the -V flag
configure:8249: mpicc -c -O2 -V -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
gcc: error: unrecognized command line option '-V'
configure:8249: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| /* end confdefs.h. */
|
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
|
| ;
| return 0;
| }
|
configure:8272: result: no
configure:8325: checking whether the C compiler accepts the -dumpversion flag
configure:8370: mpicc -c -O2 -dumpversion -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
4.8
configure:8370: $? = 0
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| /* end confdefs.h. */
|
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
|
| ;
| return 0;
| }
|
configure:8393: result: no
configure:8485: checking how to print strings
configure:8512: result: printf
configure:8533: checking for a sed that does not truncate output
configure:8597: result: /bin/sed
configure:8615: checking for grep that handles long lines and -e
configure:8673: result: /bin/grep
configure:8678: checking for egrep
configure:8740: result: /bin/grep -E
configure:8745: checking for fgrep
configure:8807: result: /bin/grep -F
configure:8842: checking for ld used by mpicc
configure:8909: result: /usr/bin/ld
configure:8916: checking if the linker (/usr/bin/ld) is GNU ld
configure:8931: result: yes
configure:8943: checking for BSD- or MS-compatible name lister (nm)
configure:8992: result: /usr/bin/nm -B
configure:9122: checking the name lister (/usr/bin/nm -B) interface
configure:9129: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:9132: /usr/bin/nm -B "conftest.o"
configure:9135: output
0000000000000000 B some_variable
configure:9142: result: BSD nm
configure:9145: checking whether ln -s works
configure:9149: result: yes
configure:9157: checking the maximum length of command line arguments
configure:9287: result: 1572864
configure:9304: checking whether the shell understands some XSI constructs
configure:9314: result: yes
configure:9318: checking whether the shell understands "+="
configure:9324: result: yes
configure:9359: checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format
configure:9399: result: func_convert_file_noop
configure:9406: checking how to convert x86_64-unknown-linux-gnu file names to
toolchain format
configure:9426: result: func_convert_file_noop
configure:9433: checking for /usr/bin/ld option to reload object files
configure:9440: result: -r
configure:9514: checking for objdump
configure:9530: found /usr/bin/objdump
configure:9541: result: objdump
configure:9573: checking how to recognize dependent libraries
configure:9775: result: pass_all
configure:9860: checking for dlltool
configure:9890: result: no
configure:9920: checking how to associate runtime and link libraries
configure:9947: result: printf %s\n
configure:10071: checking for archiver @FILE support
configure:10104: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:10104: $? = 0
configure:10107: ar cru libconftest.a @conftest.lst >&5
configure:10110: $? = 0
configure:10115: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:10118: $? = 1
configure:10130: result: @
configure:10188: checking for strip
configure:10204: found /usr/bin/strip
configure:10215: result: strip
configure:10287: checking for ranlib
configure:10303: found /usr/bin/ranlib
configure:10314: result: ranlib
configure:10416: checking command to parse /usr/bin/nm -B output from mpicc
object
configure:10536: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:10539: $? = 0
configure:10543: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' |
sed '/ __gnu_lto/d' \> conftest.nm
configure:10546: $? = 0
configure:10612: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c conftstm.o >&5
configure:10615: $? = 0
configure:10653: result: ok
configure:10690: checking for sysroot
configure:10720: result: no
configure:10797: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:10800: $? = 0
configure:10992: checking for mt
configure:11008: found /bin/mt
configure:11019: result: mt
configure:11042: checking if mt is a manifest tool
configure:11048: mt '-?'
configure:11056: result: no
configure:11714: checking how to run the C preprocessor
configure:11745: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
configure:11745: $? = 0
configure:11759: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
conftest.c:28:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:11759: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:11784: result: mpicc -E
configure:11804: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
configure:11804: $? = 0
configure:11818: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
conftest.c:28:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:11818: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:11847: checking for ANSI C header files
configure:11883: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11883: $? = 0
configure:11956: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11956: $? = 0
configure:11956: ./conftest
configure:11956: $? = 0
configure:11967: result: yes
configure:11980: checking for sys/types.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for sys/stat.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for stdlib.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for string.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for memory.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for strings.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for inttypes.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for stdint.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11980: checking for unistd.h
configure:11980: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11980: $? = 0
configure:11980: result: yes
configure:11994: checking for dlfcn.h
configure:11994: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:11994: $? = 0
configure:11994: result: yes
configure:12210: checking for objdir
configure:12225: result: .libs
configure:12496: checking if mpicc supports -fno-rtti -fno-exceptions
configure:12514: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not
for C [enabled by default]
configure:12518: $? = 0
configure:12531: result: no
configure:12858: checking for mpicc option to produce PIC
configure:12865: result: -fPIC -DPIC
configure:12873: checking if mpicc PIC flag -fPIC -DPIC works
configure:12891: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -fPIC -DPIC -DPIC conftest.c >&5
configure:12895: $? = 0
configure:12908: result: yes
configure:12937: checking if mpicc static flag -static works
configure:12965: result: yes
configure:12980: checking if mpicc supports -c -o file.o
configure:13001: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -o out/conftest2.o conftest.c >&5
configure:13005: $? = 0
configure:13027: result: yes
configure:13035: checking if mpicc supports -c -o file.o
configure:13082: result: yes
configure:13115: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries
configure:14300: result: yes
configure:14337: checking whether -lc should be explicitly linked in
configure:14345: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:14348: $? = 0
configure:14363: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname
-Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:14366: $? = 0
configure:14380: result: no
configure:14540: checking dynamic linker characteristics
configure:15067: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -Wl,-rpath -Wl,/foo conftest.c >&5
configure:15067: $? = 0
configure:15289: result: GNU/Linux ld.so
configure:15396: checking how to hardcode library paths into programs
configure:15421: result: immediate
configure:16041: checking whether stripping libraries is possible
configure:16046: result: yes
configure:16081: checking if libtool supports shared libraries
configure:16083: result: yes
configure:16086: checking whether to build shared libraries
configure:16107: result: yes
configure:16110: checking whether to build static libraries
configure:16114: result: yes
configure:16137: checking how to run the C++ preprocessor
configure:16164: mpicxx -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp
configure:16164: $? = 0
configure:16178: mpicxx -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp
conftest.cpp:40:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:16178: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:16203: result: mpicxx -E
configure:16223: mpicxx -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp
configure:16223: $? = 0
configure:16237: mpicxx -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp
conftest.cpp:40:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:16237: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:16406: checking for ld used by mpicxx
configure:16473: result: /usr/bin/ld -m elf_x86_64
configure:16480: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:16495: result: yes
configure:16550: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries
configure:17587: result: yes
configure:17623: mpicxx -c -g -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.cpp >&5
configure:17626: $? = 0
configure:18146: checking for mpicxx option to produce PIC
configure:18153: result: -fPIC -DPIC
configure:18161: checking if mpicxx PIC flag -fPIC -DPIC works
configure:18179: mpicxx -c -g -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -fPIC -DPIC -DPIC conftest.cpp >&5
configure:18183: $? = 0
configure:18196: result: yes
configure:18219: checking if mpicxx static flag -static works
configure:18247: result: yes
configure:18259: checking if mpicxx supports -c -o file.o
configure:18280: mpicxx -c -g -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII -o out/conftest2.o conftest.cpp >&5
configure:18284: $? = 0
configure:18306: result: yes
configure:18311: checking if mpicxx supports -c -o file.o
configure:18358: result: yes
configure:18388: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries
configure:18424: result: yes
configure:18565: checking dynamic linker characteristics
configure:19248: result: GNU/Linux ld.so
configure:19301: checking how to hardcode library paths into programs
configure:19326: result: immediate
configure:19474: checking if libtool supports shared libraries
configure:19476: result: yes
configure:19479: checking whether to build shared libraries
configure:19499: result: yes
configure:19502: checking whether to build static libraries
configure:19506: result: yes
configure:19827: checking for mpif77 option to produce PIC
configure:19834: result: -fPIC
configure:19842: checking if mpif77 PIC flag -fPIC works
configure:19860: mpif77 -c -g -O2 -fPIC conftest.f >&5
configure:19864: $? = 0
configure:19877: result: yes
configure:19900: checking if mpif77 static flag -static works
configure:19928: result: yes
configure:19940: checking if mpif77 supports -c -o file.o
configure:19961: mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:19965: $? = 0
configure:19987: result: yes
configure:19992: checking if mpif77 supports -c -o file.o
configure:20039: result: yes
configure:20069: checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries
configure:21172: result: yes
configure:21313: checking dynamic linker characteristics
configure:21974: result: GNU/Linux ld.so
configure:22027: checking how to hardcode library paths into programs
configure:22052: result: immediate
configure:22196: checking if libtool supports shared libraries
configure:22198: result: yes
configure:22201: checking whether to build shared libraries
configure:22221: result: yes
configure:22224: checking whether to build static libraries
configure:22228: result: yes
configure:22262: mpif90 -c -g -O2 conftest.f >&5
configure:22265: $? = 0
configure:22694: checking for mpif90 option to produce PIC
configure:22701: result: -fPIC
configure:22709: checking if mpif90 PIC flag -fPIC works
configure:22727: mpif90 -c -g -O2 -fPIC conftest.f >&5
configure:22731: $? = 0
configure:22744: result: yes
configure:22767: checking if mpif90 static flag -static works
configure:22795: result: yes
configure:22807: checking if mpif90 supports -c -o file.o
configure:22828: mpif90 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:22832: $? = 0
configure:22854: result: yes
configure:22859: checking if mpif90 supports -c -o file.o
configure:22906: result: yes
configure:22936: checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries
configure:24039: result: yes
configure:24180: checking dynamic linker characteristics
configure:24841: result: GNU/Linux ld.so
configure:24894: checking how to hardcode library paths into programs
configure:24919: result: immediate
configure:24975: checking for library containing fabs
configure:25022: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
conftest.c:47:6: warning: conflicting types for built-in function 'fabs'
[enabled by default]
char fabs ();
^
/tmp/cckmkoiT.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `fabs'
collect2: error: ld returned 1 exit status
configure:25022: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char fabs ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return fabs ();
| ;
| return 0;
| }
configure:25022: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
conftest.c:47:6: warning: conflicting types for built-in function 'fabs'
[enabled by default]
char fabs ();
^
configure:25022: $? = 0
configure:25039: result: -lm
configure:25050: checking for library containing adler32_combine
configure:25097: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
/tmp/ccAD6Bo7.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `adler32_combine'
collect2: error: ld returned 1 exit status
configure:25097: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char adler32_combine ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return adler32_combine ();
| ;
| return 0;
| }
configure:25097: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lz -lm >&5
/usr/bin/ld: cannot find -lz
collect2: error: ld returned 1 exit status
configure:25097: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char adler32_combine ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return adler32_combine ();
| ;
| return 0;
| }
configure:25114: result: no
configure:25139: checking for library containing lua_createtable
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
/tmp/ccK3EOK8.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `lua_createtable'
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua52 -lm >&5
/usr/bin/ld: cannot find -llua52
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua5.2 -lm >&5
/usr/bin/ld: cannot find -llua5.2
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua51 -lm >&5
/usr/bin/ld: cannot find -llua51
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua5.1 -lm >&5
/usr/bin/ld: cannot find -llua5.1
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua -lm >&5
/usr/bin/ld: cannot find -llua
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25186: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -llua5 -lm >&5
/usr/bin/ld: cannot find -llua5
collect2: error: ld returned 1 exit status
configure:25186: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char lua_createtable ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return lua_createtable ();
| ;
| return 0;
| }
configure:25203: result: no
configure:25250: Checking BLAS
configure:26474: Not using BLAS
configure:26507: Checking LAPACK
configure:26819: Not using LAPACK
configure:26837: checking for getopt
configure:26870: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
configure:26870: $? = 0
configure:26871: result: successful
configure:26898: checking for obstack
configure:26933: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
configure:26933: $? = 0
configure:26934: result: successful
configure:26963: checking for library containing pthread_create
configure:27010: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lm >&5
/tmp/cck623YU.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
configure:27010: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "p4est"
| #define PACKAGE_TARNAME "p4est"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "p4est 1.1"
| #define PACKAGE_BUGREPORT "p4...@librelist.com"
| #define PACKAGE_URL ""
| #define PACKAGE "p4est"
| #define VERSION "1.1"
| #define VERSION_MAJOR 1
| #define VERSION_MINOR 1
| #define VERSION_POINT 1.1
| #define VTK_COMPRESSION 1
| #define ENABLE_VTK_COMPRESSION 1
| #define BUILD_2D 1
| #define ENABLE_BUILD_2D 1
| #define BUILD_3D 1
| #define ENABLE_BUILD_3D 1
| #define MPI 1
| #define ENABLE_MPI 1
| #define MPIIO 1
| #define ENABLE_MPIIO 1
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## _
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pthread_create ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return pthread_create ();
| ;
| return 0;
| }
configure:27010: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lpthread -lm >&5
configure:27010: $? = 0
configure:27027: result: -lpthread
configure:27051: checking for POSIX threads
configure:27136: result: not used
configure:27144: checking for metis
configure:27235: result: not used
configure:27242: checking for PETSc
configure:27401: result: not used
configure:27417: checking arpa/inet.h usability
configure:27417: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:27417: $? = 0
configure:27417: result: yes
configure:27417: checking arpa/inet.h presence
configure:27417: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
configure:27417: $? = 0
configure:27417: result: yes
configure:27417: checking for arpa/inet.h
configure:27417: result: yes
configure:27417: checking netinet/in.h usability
configure:27417: mpicc -c -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c >&5
configure:27417: $? = 0
configure:27417: result: yes
configure:27417: checking netinet/in.h presence
configure:27417: mpicc -E -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c
configure:27417: $? = 0
configure:27417: result: yes
configure:27417: checking for netinet/in.h
configure:27417: result: yes
configure:27417: checking for unistd.h
configure:27417: result: yes
configure:27434: checking for fsync
configure:27434: mpicc -o conftest -O2 -DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII conftest.c -lpthread -lm >&5
configure:27434: $? = 0
configure:27434: result: yes
configure:27525: Building with source of package sc
configure:27730: checking that generated files are newer than configure
configure:27736: result: done
configure:27863: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by p4est config.status 1.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on dulcet
config.status:1368: creating Makefile
config.status:1368: creating Makefile.p4est.pre
config.status:1368: creating Doxyfile
config.status:1368: creating src/pre_config.h
config.status:1582: executing src/p4est_config.h commands
config.status:1620: creating src/p4est_config.h - prefix P4EST for
src/pre_config.h defines
config.status:1582: executing depfiles commands
config.status:1582: executing libtool commands
configure:30991: === configuring in sc
(/home/ubuntu/software/p4est/p4est-build/FAST/sc)
configure:31054: running /bin/bash
/home/ubuntu/software/p4est/p4est-1.1/sc/configure --disable-option-checking
'--prefix=/home/ubuntu/programfiles/p4est//FAST' '--enable-mpi'
'--enable-shared' '--disable-vtk-binary' '--without-blas' '--disable-mpithread'
'CFLAGS=-O2' 'CPPFLAGS=-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII' --cache-file=/dev/null
--srcdir=/home/ubuntu/software/p4est/p4est-1.1/sc
configure:31080: - P4EST -------------------------------------------------
We did not find a recent zlib containing the function adler32_combine.
This is OK if the following does not matter to you:
Calling any sc functions that rely on zlib will abort your program.
These functions include sc_array_checksum and sc_vtk_write_compressed.
You can fix this by compiling a working zlib and pointing LIBS to it.
configure:31095: - P4EST -------------------------------------------------
We did not find a recent lua containing the function lua_createtable.
This is OK if the following does not matter to you:
Including sc_lua.h in your code will abort the compilation.
You can fix this by compiling a working lua and pointing LIBS to it.
configure:31113: - P4EST -------------------------------------------------
VTK compression is enabled, but we did not find a recent zlib.
This is OK if the following does not matter to you:
Calling p4est_vtk_write_file will abort your program.
You can fix this by compiling a working zlib and pointing LIBS to it,
or by using the p4est configure option --disable-vtk-zlib.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-O2
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value='-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL
-DP4EST_BACKWARD_DEALII'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_f77_dummy_main=none
ac_cv_f77_libs=' -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath'
ac_cv_f77_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fortran_dummy_main=none
ac_cv_func_fsync=yes
ac_cv_header_arpa_inet_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netinet_in_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_LINT=no
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='mpicc -E'
ac_cv_prog_CXXCPP='mpicxx -E'
ac_cv_prog_P4EST_MPIRUN=mpiexec
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=mpicc
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_mpicc_c_o=yes
ac_cv_prog_cxx_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_c_o=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f77_v=-v
ac_cv_prog_fc_c_o=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_search_adler32_combine=no
ac_cv_search_fabs=-lm
ac_cv_search_lua_createtable=no
ac_cv_search_pthread_create=-lpthread
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/
{\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/
{"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^
]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int
\1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
sc_cv_c_check_flag__V=no
sc_cv_c_check_flag__dumpversion=no
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/missing
aclocal-1.14'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/missing
autoconf'
AUTOHEADER='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/missing
autoheader'
AUTOMAKE='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/missing
automake-1.14'
AWK='gawk'
CC='mpicc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-O2'
CPP='mpicc -E'
CPPFLAGS='-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL -DP4EST_BACKWARD_DEALII'
CXX='mpicxx'
CXXCPP='mpicxx -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
C_VERSION=''
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='mpif77'
FC='mpif90'
FCFLAGS='-g -O2'
FCLIBS=' -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath'
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FLIBS=' -L/home/ubuntu/programfiles/mpich/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpifort -lmpi -lgfortran -lm
-lquadmath'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=''
LIBOBJS=''
LIBS='-lpthread -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LINT='no'
LINT_FALSE=''
LINT_FLAGS=''
LINT_TRUE='#'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/missing
makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
MPI_INCLUDES='-I/home/ubuntu/programfiles/mpich/include'
MPI_INCLUDE_PATH='/home/ubuntu/programfiles/mpich/include'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
P4EST_DISTCLEAN=' P4EST_SC_SOURCE.log'
P4EST_DIST_DENY_FALSE=''
P4EST_DIST_DENY_TRUE='#'
P4EST_ENABLE_BUILD_2D_FALSE='#'
P4EST_ENABLE_BUILD_2D_TRUE=''
P4EST_ENABLE_BUILD_3D_FALSE='#'
P4EST_ENABLE_BUILD_3D_TRUE=''
P4EST_ENABLE_BUILD_P6EST_FALSE=''
P4EST_ENABLE_BUILD_P6EST_TRUE='#'
P4EST_ENABLE_DEBUG_FALSE=''
P4EST_ENABLE_DEBUG_TRUE='#'
P4EST_ENABLE_MPIIO_FALSE='#'
P4EST_ENABLE_MPIIO_TRUE=''
P4EST_ENABLE_MPITHREAD_FALSE=''
P4EST_ENABLE_MPITHREAD_TRUE='#'
P4EST_ENABLE_MPI_FALSE='#'
P4EST_ENABLE_MPI_TRUE=''
P4EST_ENABLE_PTHREAD_FALSE=''
P4EST_ENABLE_PTHREAD_TRUE='#'
P4EST_ENABLE_VTK_BINARY_FALSE=''
P4EST_ENABLE_VTK_BINARY_TRUE='#'
P4EST_ENABLE_VTK_COMPRESSION_FALSE='#'
P4EST_ENABLE_VTK_COMPRESSION_TRUE=''
P4EST_ENABLE_VTK_DOUBLES_FALSE=''
P4EST_ENABLE_VTK_DOUBLES_TRUE='#'
P4EST_F77_COMPILER=''
P4EST_FC_COMPILER=''
P4EST_HAVE_LPTHREAD_FALSE='#'
P4EST_HAVE_LPTHREAD_TRUE=''
P4EST_HAVE_LUA_FALSE=''
P4EST_HAVE_LUA_TRUE='#'
P4EST_HAVE_ZLIB_FALSE=''
P4EST_HAVE_ZLIB_TRUE='#'
P4EST_MPIRUN='mpiexec'
P4EST_MPIRUN_FALSE='#'
P4EST_MPIRUN_TRUE=''
P4EST_MPI_TEST_FLAGS='-n 2'
P4EST_PETSC_INCLUDE_DIRS=''
P4EST_PETSC_LINK_LIBS=''
P4EST_PROVIDE_GETOPT_FALSE=''
P4EST_PROVIDE_GETOPT_TRUE='#'
P4EST_PROVIDE_OBSTACK_FALSE=''
P4EST_PROVIDE_OBSTACK_TRUE='#'
P4EST_SC_AMFLAGS='-I $(top_srcdir)/sc/config'
P4EST_SC_CPPFLAGS='-Isc/src -I$(top_srcdir)/sc/src'
P4EST_SC_LDADD='sc/src/libsc.la'
P4EST_SC_MK_INCLUDE='include ${p4est_sysconfdir}/Makefile.sc.mk'
P4EST_SC_MK_USE_FALSE=''
P4EST_SC_MK_USE_TRUE='#'
P4EST_SC_SUBDIR='sc'
P4EST_WITH_BLAS_FALSE=''
P4EST_WITH_BLAS_TRUE='#'
P4EST_WITH_LAPACK_FALSE=''
P4EST_WITH_LAPACK_TRUE='#'
P4EST_WITH_METIS_FALSE=''
P4EST_WITH_METIS_TRUE='#'
P4EST_WITH_PETSC_FALSE=''
P4EST_WITH_PETSC_TRUE='#'
P4EST_WITH_SC_FALSE=''
P4EST_WITH_SC_TRUE='#'
PACKAGE='p4est'
PACKAGE_BUGREPORT='p4...@librelist.com'
PACKAGE_NAME='p4est'
PACKAGE_PREFIX='P4EST'
PACKAGE_STRING='p4est 1.1'
PACKAGE_TARNAME='p4est'
PACKAGE_URL=''
PACKAGE_VERSION='1.1'
PATH_SEPARATOR=':'
PETSCARCH=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
VERSION='1.1'
ac_ct_AR='ar'
ac_ct_CC='mpicc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/ubuntu/software/p4est/p4est-1.1/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/ubuntu/programfiles/p4est//FAST'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' sc'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "p4est"
#define PACKAGE_TARNAME "p4est"
#define PACKAGE_VERSION "1.1"
#define PACKAGE_STRING "p4est 1.1"
#define PACKAGE_BUGREPORT "p4...@librelist.com"
#define PACKAGE_URL ""
#define PACKAGE "p4est"
#define VERSION "1.1"
#define VERSION_MAJOR 1
#define VERSION_MINOR 1
#define VERSION_POINT 1.1
#define VTK_COMPRESSION 1
#define ENABLE_VTK_COMPRESSION 1
#define BUILD_2D 1
#define ENABLE_BUILD_2D 1
#define BUILD_3D 1
#define ENABLE_BUILD_3D 1
#define MPI 1
#define ENABLE_MPI 1
#define MPIIO 1
#define ENABLE_MPIIO 1
#define F77_FUNC(name,NAME) name ## _
#define F77_FUNC_(name,NAME) name ## _
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LPTHREAD 1
#define HAVE_ARPA_INET_H 1
#define HAVE_NETINET_IN_H 1
#define HAVE_UNISTD_H 1
#define HAVE_FSYNC 1
#define CPP "mpicc -E"
#define CPPFLAGS "-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL -DP4EST_BACKWARD_DEALII"
#define CC "mpicc"
#define CFLAGS "-O2"
#define LDFLAGS ""
#define LIBS "-lpthread -lm "
configure: exit 0
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/ubuntu/programfiles/dealii
# CMAKE_SOURCE_DIR: /home/ubuntu/software/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/ubuntu/software/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.4 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fpic -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-long-long -Wno-deprecated-declarations
-Wno-literal-suffix -std=c++11
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing
# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_BUNDLED_INCLUDE_DIRS =
/home/ubuntu/software/dealii-8.4.1/bundled/boost-1.56.0/include
# BOOST_LIBRARIES = rt
# ( DEAL_II_WITH_BZIP2 = OFF )
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# ( DEAL_II_WITH_LAPACK = OFF )
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.1
# MPI_C_COMPILER = /home/ubuntu/programfiles/mpich/bin/mpicc
# MPI_CXX_COMPILER = /home/ubuntu/programfiles/mpich/bin/mpicxx
# MPI_Fortran_COMPILER = /home/ubuntu/programfiles/mpich/bin/mpif90
# MPI_CXX_FLAGS =
# MPI_LINKER_FLAGS = -Wl,-rpath
-Wl,/home/ubuntu/programfiles/mpich/lib -Wl,--enable-new-dtags
# MPI_INCLUDE_DIRS = /home/ubuntu/programfiles/mpich/include
# MPI_USER_INCLUDE_DIRS = /home/ubuntu/programfiles/mpich/include
# MPI_LIBRARIES =
/home/ubuntu/programfiles/mpich/lib/libmpicxx.so;/home/ubuntu/programfiles/mpich/lib/libmpifort.so;/home/ubuntu/programfiles/mpich/lib/libmpi.so
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/ubuntu/software/dealii-8.4.1/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 1.1
# P4EST_DIR = /home/ubuntu/programfiles/p4est
# P4EST_INCLUDE_DIRS = /home/ubuntu/programfiles/p4est/FAST/include
# P4EST_USER_INCLUDE_DIRS =
/home/ubuntu/programfiles/p4est/FAST/include
# P4EST_LIBRARIES =
optimized;/home/ubuntu/programfiles/p4est/FAST/lib/libp4est.so;/home/ubuntu/programfiles/p4est/FAST/lib/libsc.so;debug;/home/ubuntu/programfiles/p4est/DEBUG/lib/libp4est.so;/home/ubuntu/programfiles/p4est/DEBUG/lib/libsc.so;general;/home/ubuntu/programfiles/mpich/lib/libmpi.so
# DEAL_II_WITH_PETSC set up with external dependencies
# PETSC_VERSION = 3.6.4.0
# PETSC_DIR = /home/ubuntu/software/petsc-3.6.4/
# PETSC_INCLUDE_DIRS =
/home/ubuntu/software/petsc-3.6.4/include;/home/ubuntu/software/petsc-3.6.4/x86_64/include
# PETSC_USER_INCLUDE_DIRS =
/home/ubuntu/software/petsc-3.6.4/include;/home/ubuntu/software/petsc-3.6.4/x86_64/include
# PETSC_LIBRARIES =
/home/ubuntu/software/petsc-3.6.4/x86_64/lib/libpetsc.so
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/ubuntu/software/dealii-8.4.1/bundled/tbb41_20130401oss/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# ( DEAL_II_WITH_UMFPACK = OFF )
# ( DEAL_II_WITH_ZLIB = OFF )
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
###
