I have similar experience. I solved it is by installing a local MPICH or OPENMPI (you can only have one), then export it to PATH.
BR YC Chen On Thursday, November 10, 2016 at 12:35:24 AM UTC, Joaquin wrote: > > Sorry for the late answer. I had to re-install dealii + trilinos. > > jomivalen@Nalia ~/cfem/trilinos/lib $ ldd libepetra.so.12.6.2 | grep mpi > libmpi_cxx.so.1 => /usr/lib/libmpi_cxx.so.1 (0x00007fb4ac8f7000) > libmpi.so.1 => /usr/lib/libmpi.so.1 (0x00007fb4ac576000) > > jomivalen@Nalia ~/thesis/dealii-8.4.1/build/lib $ ldd > libdeal_II.g.so.8.4.1 | grep mpi > libmpicxx.so.12 => > /home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpicxx.so.12 > > (0x00007f75b64c3000) > libmpi.so.12 => > /home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpi.so.12 > > (0x00007f75b3855000) > libmpi_cxx.so.1 => /usr/lib/libmpi_cxx.so.1 (0x00007f75ae037000) > libmpi.so.1 => /usr/lib/libmpi.so.1 (0x00007f75adcb5000) > > What does these results mean?. What should i do? > > Thanks, > Joaquin > > 2016-11-09 18:56 GMT-04:00 Wolfgang Bangerth <bang...@colostate.edu > <javascript:>>: > >> On 11/09/2016 03:52 PM, 'Joaquin M Valencia Bravo' via deal.II User Group >> wrote: >> >>> >>> In case of trilinos, I followed the next steps: >>> $ mkdir build >>> $ cd build >>> $ >>> >>> cmake \ >>> -DTrilinos_ENABLE_Sacado=ON \ >>> -DTrilinos_ENABLE_MueLu:BOOL=ON \ >>> -DTrilinos_ENABLE_Stratimikos=ON \ >>> -DCMAKE_BUILD_TYPE=RELEASE \ >>> -DCMAKE_CXX_FLAGS="-g -O3" \ >>> -DCMAKE_C_FLAGS="-g -O3" \ >>> -DCMAKE_FORTRAN_FLAGS="-g -O5" \ >>> -DTrilinos_EXTRA_LINK_FLAGS="-lgfortran" \ >>> -DCMAKE_VERBOSE_MAKEFILE=FALSE \ >>> -DTrilinos_VERBOSE_CONFIGURE=FALSE \ >>> -DTPL_ENABLE_MPI=ON \ >>> -DBUILD_SHARED_LIBS=ON \ >>> -DCMAKE_INSTALL_PREFIX:PATH=$HOME/share/trilinos \ >>> >>> $ make -j8 install >>> >>> In case of dealii, I followed the next steps: >>> >>> $ mkdir build >>> >>> $ cd build >>> >>> $ cmake -DCMAKE_INSTALL_PREFIX=/home/jomivalen/cfem/deal.II \ >>> -DTRILINOS_DIR=/home/jomivalen/thesis/trilinos-12.6.2 \ >>> >>> -DDEAL_II_WITH_TRILINOS=ON -DDEAL_II_WITH_MPI=ON ../ >>> >>> $ make -j8 install >>> >>> $ make test (failed) >>> >> >> That's interesting then. Can you try to do >> ldd $HOME/share/trilinos/lib/libepetra.so.12.6.2 >> ldd /home/jomivalen/cfem/deal.II/lib/libdeal_II.g.so.8.4.1 >> and in both cases see which MPI libraries they link to? For example, for >> me this yields the following: >> >> rilinos-12.8.1/lib> ldd libepetra.so.12.8.1 | grep mpi >> libmpi_usempi.so.1 => /usr/lib64/openmpi/lib/libmpi_usempi.so.1 >> (0x00007f1107a5f000) >> libmpi_mpifh.so.12 => /usr/lib64/openmpi/lib/libmpi_mpifh.so.12 >> (0x00007f110780b000) >> libmpi_cxx.so.1 => /usr/lib64/openmpi/lib/libmpi_cxx.so.1 >> (0x00007f1107091000) >> libmpi.so.12 => /usr/lib64/openmpi/lib/libmpi.so.12 >> (0x00007f1106dad000) >> libopen-rte.so.12 => /usr/lib64/openmpi/lib/libopen-rte.so.12 >> (0x00007f1105d31000) >> libopen-pal.so.13 => /usr/lib64/openmpi/lib/libopen-pal.so.13 >> (0x00007f1105a8e000) >> rilinos-12.8.1/lib> cd >> f/bangerth> cd p/deal.II/1/build/lib/ >> build/lib> ldd libdeal_II.so.8.5.0-pre | grep mpi >> libmpi_cxx.so.1 => /usr/lib64/openmpi/lib/libmpi_cxx.so.1 >> (0x00007f7e22f28000) >> libmpi.so.12 => /usr/lib64/openmpi/lib/libmpi.so.12 >> (0x00007f7e22181000) >> libmpi_usempi.so.1 => /usr/lib64/openmpi/lib/libmpi_usempi.so.1 >> (0x00007f7e152ff000) >> libmpi_mpifh.so.12 => /usr/lib64/openmpi/lib/libmpi_mpifh.so.12 >> (0x00007f7e150ab000) >> libopen-rte.so.12 => /usr/lib64/openmpi/lib/libopen-rte.so.12 >> (0x00007f7e148cf000) >> libopen-pal.so.13 => /usr/lib64/openmpi/lib/libopen-pal.so.13 >> (0x00007f7e1462c000 >> >> So they are the same. >> >> >> Best >> W. >> >> -- >> ------------------------------------------------------------------------ >> Wolfgang Bangerth email: bang...@colostate.edu >> <javascript:> >> www: http://www.math.colostate.edu/~bangerth/ >> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- You received this message because you are subscribed to a topic in >> the Google Groups "deal.II User Group" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/dealii/r4B-B-s6fO4/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> dealii+un...@googlegroups.com <javascript:>. >> For more options, visit https://groups.google.com/d/optout. >> > > > > -- > Joaquin Valencia > Graduate Student > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
