On Wednesday, November 9, 2016 at 2:58:32 PM UTC-4, Joaquin wrote:
>
> Dear all,
>
> I hope someone help me. I want to run step-40, so I need trilinos and
> petsc. First, I'm trying to interface trilinos-12.6.2 with deal.II-8.4.1.
> My computer has a gnu 4.8.4 compiler. Everything is ok until the "make
> test". The five step failed. I'm sending detailed.log and quicktests.log
> files.
>
Thanks in advance.
Joaquín
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/jomivalen/cfem/dealII-8.4.1
# CMAKE_SOURCE_DIR: /home/jomivalen/thesis/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/jomivalen/thesis/dealii-8.4.1/build
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# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
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# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
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# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ARPACK set up with external dependencies
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# ARPACK_LIBRARIES =
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# DEAL_II_WITH_BOOST set up with bundled packages
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# DEAL_II_WITH_METIS set up with external dependencies
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# METIS_LIBRARIES =
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# DEAL_II_WITH_MPI set up with external dependencies
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# MPI_C_COMPILER =
/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/bin/mpicc
# MPI_CXX_COMPILER =
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# MPI_Fortran_COMPILER =
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# MPI_CXX_FLAGS =
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# DEAL_II_WITH_MUPARSER set up with bundled packages
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# DEAL_II_WITH_NETCDF set up with external dependencies
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# ( DEAL_II_WITH_P4EST = OFF )
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# ( DEAL_II_WITH_SLEPC = OFF )
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/home/jomivalen/thesis/dealii-8.4.1/bundled/tbb41_20130401oss/include
# THREADS_LIBRARIES = dl
# DEAL_II_WITH_TRILINOS set up with external dependencies
# TRILINOS_VERSION = 12.6.2
# TRILINOS_DIR = /home/jomivalen/thesis/trilinos-12.6.2
# TRILINOS_INCLUDE_DIRS =
/home/jomivalen/thesis/trilinos-12.6.2/include
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/home/jomivalen/thesis/trilinos-12.6.2/include
# TRILINOS_LIBRARIES =
/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu-adapters.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu-interface.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteko.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikos.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikosbelos.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikosaztecoo.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikosamesos.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikosml.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libstratimikosifpack.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libifpack2-adapters.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libifpack2.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libanasazitpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libModeLaplace.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libanasaziepetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libanasazi.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libamesos2.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libbelostpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libbelosepetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libbelos.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libml.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libifpack.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libzoltan2.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libpamgen_extras.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libpamgen.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libamesos.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libgaleri-xpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libgaleri-epetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libaztecoo.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libisorropia.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libxpetra-sup.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libxpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libthyratpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libthyraepetraext.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libthyraepetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libthyracore.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libepetraext.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetraext.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetrainout.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libkokkostsqr.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetrakernels.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetraclassiclinalg.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetraclassicnodeapi.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtpetraclassic.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libtriutils.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libzoltan.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libepetra.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libsacado.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/librtop.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchoskokkoscomm.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchoskokkoscompat.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchosremainder.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchosnumerics.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchoscomm.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchosparameterlist.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libteuchoscore.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libkokkosalgorithms.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libkokkoscontainers.so;/home/jomivalen/thesis/trilinos-12.6.2/lib/libkokkoscore.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpicxx.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpifort.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/release_mt/libmpi.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpigi.a;dl;rt;pthread
# DEAL_II_WITH_UMFPACK set up with external dependencies
# UMFPACK_VERSION = 5.6.2
# UMFPACK_LINKER_FLAGS =
# UMFPACK_INCLUDE_DIRS = /usr/include/suitesparse
# UMFPACK_USER_INCLUDE_DIRS = /usr/include/suitesparse
# UMFPACK_LIBRARIES =
/usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libmetis.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpifort.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/release_mt/libmpi.so;/home/jomivalen/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpigi.a;dl;rt;pthread;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;rt
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.8
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
###
[HANDLER_OUTPUT]
Test project /home/jomivalen/thesis/dealii-8.4.1/build/tests/quick_tests
Start 1: step.debug
1/5 Test #1: step.debug .......................***Failed 23.38 sec
Test step.debug: BUILD
=============================== OUTPUT BEGIN ===============================
step.debug: BUILD failed. Output:
Scanning dependencies of target kill-step.debug-OK
[ 0%] Built target kill-step.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 5%] Built target obj_boost_serialization.debug
[ 6%] Built target obj_muparser.debug
[ 6%] Built target obj_boost_system.debug
[ 6%] Built target obj_boost_iostreams.debug
[ 15%] Built target obj_tbb.debug
[ 20%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 45%] Built target obj_fe.debug
[ 47%] Built target obj_dofs.inst
[ 50%] Built target obj_dofs.debug
[ 55%] Built target obj_lac.inst
[ 66%] Built target obj_lac.debug
[ 67%] Built target obj_base.inst
[ 79%] Built target obj_base.debug
[ 83%] Built target obj_grid.inst
[ 86%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target step.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/step.debug.dir/step.cc.o
Linking CXX executable step.debug
/usr/bin/ld: warning: libmpi.so.1, needed by
/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu-adapters.so, may conflict
with libmpi.so.12
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Teuchos::details::safeCommFree(int*)'
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Epetra_MpiComm::Epetra_MpiComm(int)'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/step.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
make[4]: *** [step.debug.run] Error 2
step.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/jomivalen/thesis/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 2: step.release
2/5 Test #2: step.release .....................***Failed 18.85 sec
Test step.release: BUILD
=============================== OUTPUT BEGIN ===============================
step.release: BUILD failed. Output:
Scanning dependencies of target kill-step.release-OK
[ 0%] Built target kill-step.release-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.release
[ 6%] Built target obj_boost_serialization.release
[ 13%] Built target obj_tbb.release
[ 13%] Built target obj_boost_system.release
[ 16%] Built target obj_muparser.release
[ 18%] Built target obj_boost_iostreams.release
[ 23%] Built target obj_numerics.inst
[ 32%] Built target obj_numerics.release
[ 40%] Built target obj_fe.inst
[ 50%] Built target obj_fe.release
[ 52%] Built target obj_dofs.inst
[ 55%] Built target obj_dofs.release
[ 61%] Built target obj_lac.inst
[ 71%] Built target obj_lac.release
[ 72%] Built target obj_base.inst
[ 84%] Built target obj_base.release
[ 88%] Built target obj_grid.inst
[ 91%] Built target obj_grid.release
[ 93%] Built target obj_hp.inst
[ 93%] Built target obj_hp.release
[ 94%] Built target obj_multigrid.inst
[ 96%] Built target obj_multigrid.release
[ 98%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.release
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.release
[ 98%] Built target obj_integrators.release
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.release
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.release
[100%] Built target deal_II
Scanning dependencies of target step.release
[100%] Building CXX object
tests/quick_tests/CMakeFiles/step.release.dir/step.cc.o
Linking CXX executable step.release
/usr/bin/ld: warning: libmpi.so.1, needed by
/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu-adapters.so, may conflict
with libmpi.so.12
../../lib/libdeal_II.so.8.4.1: undefined reference to
`Teuchos::details::safeCommFree(int*)'
../../lib/libdeal_II.so.8.4.1: undefined reference to
`Epetra_MpiComm::Epetra_MpiComm(int)'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/step.release] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.release.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2
make[4]: *** [step.release.run] Error 2
step.release: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/jomivalen/thesis/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 3: affinity.debug
3/5 Test #3: affinity.debug ...................***Failed 14.71 sec
Test affinity.debug: BUILD
=============================== OUTPUT BEGIN ===============================
affinity.debug: BUILD failed. Output:
Scanning dependencies of target kill-affinity.debug-OK
[ 0%] Built target kill-affinity.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 5%] Built target obj_boost_serialization.debug
[ 6%] Built target obj_muparser.debug
[ 6%] Built target obj_boost_system.debug
[ 6%] Built target obj_boost_iostreams.debug
[ 15%] Built target obj_tbb.debug
[ 20%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 45%] Built target obj_fe.debug
[ 47%] Built target obj_dofs.inst
[ 50%] Built target obj_dofs.debug
[ 55%] Built target obj_lac.inst
[ 66%] Built target obj_lac.debug
[ 67%] Built target obj_base.inst
[ 79%] Built target obj_base.debug
[ 83%] Built target obj_grid.inst
[ 86%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target affinity.debug
[100%] Building CXX object
tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o
Linking CXX executable affinity.debug
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Teuchos::details::safeCommFree(int*)'
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Epetra_MpiComm::Epetra_MpiComm(int)'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/affinity.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/affinity.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2
make[4]: *** [affinity.debug.run] Error 2
affinity.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/jomivalen/thesis/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 4: mpi.debug
4/5 Test #4: mpi.debug ........................***Failed 15.45 sec
Test mpi.debug: BUILD
=============================== OUTPUT BEGIN ===============================
mpi.debug: BUILD failed. Output:
Scanning dependencies of target kill-mpi.debug-OK
[ 0%] Built target kill-mpi.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 5%] Built target obj_boost_serialization.debug
[ 6%] Built target obj_muparser.debug
[ 6%] Built target obj_boost_system.debug
[ 6%] Built target obj_boost_iostreams.debug
[ 15%] Built target obj_tbb.debug
[ 20%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 45%] Built target obj_fe.debug
[ 47%] Built target obj_dofs.inst
[ 50%] Built target obj_dofs.debug
[ 55%] Built target obj_lac.inst
[ 66%] Built target obj_lac.debug
[ 67%] Built target obj_base.inst
[ 79%] Built target obj_base.debug
[ 83%] Built target obj_grid.inst
[ 86%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target mpi.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/mpi.debug.dir/mpi.cc.o
/home/jomivalen/thesis/dealii-8.4.1/tests/quick_tests/mpi.cc: In function ‘int
main(int, char**)’:
/home/jomivalen/thesis/dealii-8.4.1/tests/quick_tests/mpi.cc:43:7: warning:
variable ‘err’ set but not used [-Wunused-but-set-variable]
int err;
^
Linking CXX executable mpi.debug
/usr/bin/ld: warning: libmpi.so.1, needed by
/home/jomivalen/thesis/trilinos-12.6.2/lib/libmuelu-adapters.so, may conflict
with libmpi.so.12
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Teuchos::details::safeCommFree(int*)'
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Epetra_MpiComm::Epetra_MpiComm(int)'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/mpi.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/mpi.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule] Error 2
make[4]: *** [mpi.debug.run] Error 2
mpi.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/jomivalen/thesis/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 5: tbb.debug
5/5 Test #5: tbb.debug ........................***Failed 14.12 sec
Test tbb.debug: BUILD
=============================== OUTPUT BEGIN ===============================
tbb.debug: BUILD failed. Output:
Scanning dependencies of target kill-tbb.debug-OK
[ 0%] Built target kill-tbb.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 5%] Built target obj_boost_serialization.debug
[ 6%] Built target obj_muparser.debug
[ 6%] Built target obj_boost_system.debug
[ 6%] Built target obj_boost_iostreams.debug
[ 15%] Built target obj_tbb.debug
[ 20%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 45%] Built target obj_fe.debug
[ 47%] Built target obj_dofs.inst
[ 50%] Built target obj_dofs.debug
[ 55%] Built target obj_lac.inst
[ 66%] Built target obj_lac.debug
[ 67%] Built target obj_base.inst
[ 79%] Built target obj_base.debug
[ 83%] Built target obj_grid.inst
[ 86%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target tbb.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/tbb.debug.dir/tbb.cc.o
/home/jomivalen/thesis/dealii-8.4.1/tests/quick_tests/tbb.cc:49:6: warning:
unused parameter ‘scratch’ [-Wunused-parameter]
void assemble(const std::vector<int>::iterator &it,
^
Linking CXX executable tbb.debug
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Teuchos::details::safeCommFree(int*)'
../../lib/libdeal_II.g.so.8.4.1: undefined reference to
`Epetra_MpiComm::Epetra_MpiComm(int)'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/tbb.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/tbb.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2
make[4]: *** [tbb.debug.run] Error 2
tbb.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/jomivalen/thesis/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
0% tests passed, 5 tests failed out of 5
Total Test time (real) = 86.56 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - mpi.debug (Failed)
5 - tbb.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
