Two minor changes missed in 0.2.7's ac2.61 support:

  (1) prefer --datarootdir for ac2.60 *and above*, not just ac2.60
  (2) automake-1.10's aclocal inserts more stringent error checking
      for autoconf version mismatch into aclocal.m4.  This error
      checking cause <current> autoreconf to complain if it is newer
      than the autoconf used originally. See aclocal snippet below:

From aclocal-1.10:
--------------------------
  if ($ac_version)
    {
      # Do not use "$output_file" here for the same reason we do not
      # use it in the header below.  autom4te will output the name of
      # the file in the diagnostic anyway.
      $output = "m4_if(m4_PACKAGE_VERSION, [$ac_version],,
[m4_fatal([this file was generated for autoconf $ac_version.
You have another version of autoconf.  If you want to use that,
you should regenerate the build system entirely.], [63])])
--------------------------

I interpret "regenerate the build system entirely" to mean "remove all autotool generated files before running autoreconf".

2007-01-05  Charles Wilson  <...>

        * bin/cygport.in: use --datarootdir in preference
        to --datadir/--infodir/--mandir when using
        autoconf-2.60 and later.
        * autogen.sh: Ensure that autoconf will not complain
        when it is newer than the one previously used (needed
        because automake-1.10's aclocal now inserts more stringent
        checking into aclocal.m4)

--
Chuck

Index: bin/cygport.in
===================================================================
RCS file: /cvsroot/cygwin-ports/cygport/bin/cygport.in,v
retrieving revision 1.45
diff -u -r1.45 cygport.in
--- bin/cygport.in      4 Jan 2007 02:35:26 -0000       1.45
+++ bin/cygport.in      6 Jan 2007 01:01:22 -0000
@@ -796,7 +796,7 @@
        fi
 
        case "x$(grep -m 1 'GNU Autoconf' ${confdir}/configure | cut -d ' ' -f 
6)" in
-               x2.60)
+               x2.60|x2.61)
                        confargs+=" --datarootdir=/usr/share 
--docdir=/usr/share/doc/${P}"
                        ;;
                *)
Index: autogen.sh
===================================================================
RCS file: /cvsroot/cygwin-ports/cygport/autogen.sh,v
retrieving revision 1.4
diff -u -r1.4 autogen.sh
--- autogen.sh  22 Nov 2006 04:44:58 -0000      1.4
+++ autogen.sh  6 Jan 2007 00:10:08 -0000
@@ -16,6 +16,12 @@
 }
 
 cd ${S}
+verbose rm -rf autom4te.cache/
+verbose rm -f bin/Makefile.in  data/Makefile.in 
+verbose rm -f doc/Makefile.in  lib/Makefile.in
+verbose rm -f Makefile.in      test/Makefile.in
+verbose rm -f aclocal.m4
+
 verbose aclocal --force
 verbose autoconf --force
 verbose automake --add-missing --copy --force-missing

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