My tty settings are fine. I run Rxvt by calling 

C:
chdir C:\cygwin\bin
set CYGWIN=codepage:oem tty binmode title
rxvt -sl 1000 -e bash --login -i


Looking into this more closely, I noticed that the problem occurs for
programs compiled using the free MSVC++ Toolkit 2003, but not GCC.

I think you can reproduce this behavior, if you have this compiler
installed and configured:
compile the program below with

cl loop.c

and run it:

./loop.exe

I can not terminate it using Ctrl-C. I think this has something to do
with signal handling.

---- loop.c ----

int main() {
    for(;;);
    return 0;
}

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