Using cygcheck from the 20040825 snapshot, I get
$ cygcheck -lv cygwin
Can't open file list /etc/setup/cygwin.lst.gz for package cygwin
$ zcat /etc/setup/cygwin.lst.gz|head -5
etc/
etc/defaults/
etc/defaults/etc/
etc/defaults/etc/cygserver.conf
usr/
The same problem happens with the 20040802, 20040819, and 20040821
snapshots, while the 20040724, 20040808, and 20040811 snapshots
have a working cygcheck.
I notice the ones that work have different sizes (and owners) than
the ones that don't.
$ for f in cygwin-inst-20040{724,8*}.tar.bz2; do echo $f; tar tvfj $f
usr/bin/cygcheck.exe; done
cygwin-inst-20040724.tar.bz2
-rwxr-xr-x root/root 79872 2004-07-24 12:23:44 usr/bin/cygcheck.exe
cygwin-inst-20040802.tar.bz2
-rwxr-xr-x corinna/users 42496 2004-08-02 02:27:14 usr/bin/cygcheck.exe
cygwin-inst-20040808.tar.bz2
-rwxr-xr-x root/root 79872 2004-08-08 18:41:30 usr/bin/cygcheck.exe
cygwin-inst-20040811.tar.bz2
-rwxr-xr-x root/root 79872 2004-08-11 11:39:23 usr/bin/cygcheck.exe
cygwin-inst-20040819.tar.bz2
-rwxr-xr-x corinna/users 41984 2004-08-19 04:08:03 usr/bin/cygcheck.exe
cygwin-inst-20040821.tar.bz2
-rwxr-xr-x corinna/users 41984 2004-08-21 02:41:18 usr/bin/cygcheck.exe
cygwin-inst-20040825.tar.bz2
-rwxr-xr-x corinna/users 41984 2004-08-24 15:55:22 usr/bin/cygcheck.exe
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