cyg Simple OK replaced the two files config.guess and config.sub with a 2016 timestamp and ran make again. like samtools it has a couple of warning for terms like
But it does not get the job done. the problem area seems to be in this area of make ppuzzle.c: In function ‘PP_Update_Rates’: ppuzzle.c:258:38: error: ‘PP_UPDATERATES’ undeclared (first use in this function) MPI_Send(&dummy, 0, MPI_INT, dest, PP_UPDATERATES, PP_Comm); two pages later ppuzzle.c: In function ‘PP_RecvData’: ppuzzle.c:905:3: warning: ‘MPI_Address’ is deprecated (declared at /usr/include/mpi.h:1183): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); this continues back and forth till we get to the end with <builtin>: recipe for target 'ppuzzle' failed make[3]: *** [ppuzzle] Error 1 make[3]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src' Makefile:532: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src' Makefile:397: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src' Makefile:370: recipe for target 'all-recursive' failed make: *** [all-recursive] Error 1 Robert@DESKTOP-14EL82S /usr/local/bin/tree-puzzle-5.3.rc16-windows I also ran make check Robert@DESKTOP-14EL82S /usr/local/bin/tree-puzzle-5.3.rc16-windows $ make check Making check in src make[1]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src' Making check in sprng make[2]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng' make[2]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src' cd sprng && make mlfg.o makeseed.o memory.o checkid.o store.o make[3]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng' make[3]: 'mlfg.o' is up to date. make[3]: 'makeseed.o' is up to date. make[3]: 'memory.o' is up to date. make[3]: 'checkid.o' is up to date. make[3]: 'store.o' is up to date. make[3]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng' gcc -g -O2 sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/mlfg.o sprng/makeseed.o sprng/memory.o sprng/checkid.o sprng/store.o -lm -o puzzle.exe gcc -g -O2 ppuzzle.c -o ppuzzle ppuzzle.c: In function ‘PP_Update_Rates’: ppuzzle.c:258:38: error: ‘PP_UPDATERATES’ undeclared (first use in this function) MPI_Send(&dummy, 0, MPI_INT, dest, PP_UPDATERATES, PP_Comm); I can send full make and make check runs if needed help Bob Bob May DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree -- Problem reports: http://cygwin.com/problems.html FAQ: http://cygwin.com/faq/ Documentation: http://cygwin.com/docs.html Unsubscribe info: http://cygwin.com/ml/#unsubscribe-simple
