Hi Marco,
Thanks a lot for your help. I downloaded your patched package and it
compiles without any issues.
Since the bug is in Bioconductor and not Cygwin at the end of the day,
it would probably be a good idea to file a bug report there.
If you're OK with it, I can CC you and link to your patch, just let me know.
Again, thank you!
Best,
Enrico
On 12 July 2013 04:48, marco atzeri <marco.atz...@gmail.com> wrote:
> Il 7/12/2013 12:02 AM, marco atzeri ha scritto:
>>
>> Il 7/11/2013 10:51 PM, Enrico Ferrero ha scritto:
>>>
>>> Hi,
>>>
>>
>> I am building biocLite, it will take some time...
>>
>
> Enrico,
> As I was thinking the package is broken.
> I don't know why they put a wrong and useless #include directive
>
> If you download the package and patch the source as
>
> -------------------------------------------------------
> --- orig/IRanges/src/common.h 2013-02-22 04:36:50.000000000 +0100
> +++ IRanges/src/common.h 2013-07-12 00:19:05.922405200 +0200
> @@ -55,10 +55,6 @@
> #endif
> #endif
>
> -#ifdef __CYGWIN32__
> -#include <mingw/math.h>
> -#endif
> -
> #ifndef NAN
> #define NAN (0.0 / 0.0)
> #endif
> ---------------------------------------------------------
>
> after repacking
> you can then install the local file with something like
> install.packages("/tmp/IRanges_1.16.6.tar.gz")
>
> I put the already patched file here if you are interested:
> http://matzeri.altervista.org/works/R/
>
> Regards
>
> Marco
>
>
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