We are trying to launch some Java apps from within Cygwin. The problem we're having is that then Java file IO operations want to use Windows paths and use \ as the default path separator. (This is different from classpath problems or using cygpath to convert stuff you're passing in on the command line). We need to override the File.separator (path separator) so that Java will be able to perform many file IO operations (like making a directory). Anyone have any experience with that?
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