OK, I have discovered that the culprit is the Compiz fade animation on
close for Tooltips.

=========================
Workaround:
=========================
In Compiz Settings Manager, under Animations, "Close Animation" tab, look for 
the window match line for Fade that reads:

(type=Menu | PopupMenu | DropdownMenu | Combo | Dialog | ModalDialog |
Normal)

Edit that line and add to the end of it:

& !(class=\.exe$)


=========================
Resolution:
=========================
Please add this rule by default so as to avoid bothering Wine users. Thanks.

-- 
You received this bug notification because you are a member of compiz
packagers, which is subscribed to compiz in Ubuntu.
https://bugs.launchpad.net/bugs/957879

Title:
  Wine tooltips don't disappear entirely from screen

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/compiz/+bug/957879/+subscriptions

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