I am now having what appears to be the same issue as reported in this bug, after the resolution to it. I began to notice this yesterday (March 1) with the release of compiz=1:0.9.9~daily13.03.01-0ubuntu1.
I've attached a screenshot of the issue. ** Attachment added: "Java Dialog" https://bugs.launchpad.net/ubuntu/+source/openjdk-7/+bug/1110138/+attachment/3554153/+files/Screenshot%20from%202013-03-02%2005%3A58%3A40.png -- You received this bug notification because you are a member of compiz packagers, which is subscribed to compiz in Ubuntu. https://bugs.launchpad.net/bugs/1110138 Title: Unity: wrong window dimensions / location in Java applications To manage notifications about this bug go to: https://bugs.launchpad.net/compiz/+bug/1110138/+subscriptions _______________________________________________ Mailing list: https://launchpad.net/~compiz Post to : [email protected] Unsubscribe : https://launchpad.net/~compiz More help : https://help.launchpad.net/ListHelp

