Brandon created HADOOP-17935:
--------------------------------
Summary: Spark job stuck in S3A StagingCommitter::setupJob
Key: HADOOP-17935
URL: https://issues.apache.org/jira/browse/HADOOP-17935
Project: Hadoop Common
Issue Type: Bug
Components: fs/s3
Affects Versions: 3.2.1
Environment: Spark 2.4.4
Hadoop 3.2.1
"spark.hadoop.fs.s3a.committer.name": "directory"
Reporter: Brandon
This is using the S3A directory staging committer, the Spark driver gets stuck
in a retry loop inside setupJob. Here's a stack trace:
{noformat}
org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:229)org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:271)
org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:290)
org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:676)
org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73)
org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125)
org.apache.spark.sql.execution.SQLExecution$$$Lambda$1753/2105635903.apply(Unknown
Source)
org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:78)
org.apache.spark.sql.DataFrameWriter$$Lambda$1752/114484787.apply(Unknown
Source)
org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:676)
org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:85)
org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:85)
=> holding Monitor(org.apache.spark.sql.execution.QueryExecution@705144571})
org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
org.apache.spark.sql.execution.SparkPlan$$Lambda$1574/1384254911.apply(Unknown
Source)
org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:155)
org.apache.spark.sql.execution.SparkPlan$$Lambda$1573/696771575.apply(Unknown
Source)
org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:131)
org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
=> holding
Monitor(org.apache.spark.sql.execution.command.DataWritingCommandExec@539925125})
org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:170)
org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:139)
org.apache.spark.internal.io.HadoopMapReduceCommitProtocol.setupJob(HadoopMapReduceCommitProtocol.scala:163)
org.apache.hadoop.fs.s3a.commit.staging.DirectoryStagingCommitter.setupJob(DirectoryStagingCommitter.java:65)
org.apache.hadoop.fs.s3a.commit.staging.StagingCommitter.setupJob(StagingCommitter.java:458)
org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.setupJob(FileOutputCommitter.java:355)
org.apache.hadoop.fs.FileSystem.mkdirs(FileSystem.java:2275)
org.apache.hadoop.fs.s3a.S3AFileSystem.mkdirs(S3AFileSystem.java:2062)
org.apache.hadoop.fs.s3a.S3AFileSystem.innerMkdirs(S3AFileSystem.java:2129)
org.apache.hadoop.fs.s3a.S3AFileSystem.createFakeDirectory(S3AFileSystem.java:2808)
org.apache.hadoop.fs.s3a.S3AFileSystem.createEmptyObject(S3AFileSystem.java:2833)
org.apache.hadoop.fs.s3a.Invoker.retry(Invoker.java:236)
org.apache.hadoop.fs.s3a.Invoker.retry(Invoker.java:261)
org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:322)
org.apache.hadoop.fs.s3a.Invoker$$Lambda$232/695085082.execute(Unknown Source)
org.apache.hadoop.fs.s3a.Invoker.lambda$retry$3(Invoker.java:265)
org.apache.hadoop.fs.s3a.Invoker.once(Invoker.java:109)
org.apache.hadoop.fs.s3a.S3AFileSystem$$Lambda$1932/855044548.execute(Unknown
Source)
org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$createEmptyObject$13(S3AFileSystem.java:2835)
org.apache.hadoop.fs.s3a.S3AFileSystem.putObjectDirect(S3AFileSystem.java:1589)
org.apache.hadoop.fs.s3a.S3AFileSystem.finishedWrite(S3AFileSystem.java:2751)
org.apache.hadoop.fs.s3a.S3AFileSystem.deleteUnnecessaryFakeDirectories(S3AFileSystem.java:2785)
org.apache.hadoop.fs.s3a.S3AFileSystem.removeKeys(S3AFileSystem.java:1717)
org.apache.hadoop.fs.s3a.S3AFileSystem.deleteObjects(S3AFileSystem.java:1457)
org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:285)
org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:322)
org.apache.hadoop.fs.s3a.S3AFileSystem$$Lambda$1933/1245120662.execute(Unknown
Source)
org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$deleteObjects$8(S3AFileSystem.java:1461)
com.amazonaws.services.s3.AmazonS3Client.deleteObjects(AmazonS3Client.java:2136)
com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:4315)
com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:4368)
com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:513)
com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:649)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:667)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:699)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:717)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:743)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1058)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1191)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.pauseBeforeRetry(AmazonHttpClient.java:1653)
com.amazonaws.http.AmazonHttpClient$RequestExecutor.doPauseBeforeRetry(AmazonHttpClient.java:1679)
{noformat}
Another thing of note in this setup, is the staging committer is using an S3
bucket to track pending commits (used to use HDFS for this, but switched to S3
once it became strongly consistent).
--
This message was sent by Atlassian Jira
(v8.3.4#803005)
---------------------------------------------------------------------
To unsubscribe, e-mail: common-dev-unsubscr...@hadoop.apache.org
For additional commands, e-mail: common-dev-h...@hadoop.apache.org
