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https://issues.apache.org/jira/browse/CASSANDRA-6463?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Aleksey Yeschenko resolved CASSANDRA-6463.
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    Resolution: Not A Problem

It looks to me like you did cleanup, but forgot to perform repair. Feel free to 
reopen the ticket if repair doesn't fix your issue.

> cleanup causes permission problems
> ----------------------------------
>
>                 Key: CASSANDRA-6463
>                 URL: https://issues.apache.org/jira/browse/CASSANDRA-6463
>             Project: Cassandra
>          Issue Type: Bug
>          Components: Core, Tools
>         Environment: Windows 7 / Java 1.7.0.25
>            Reporter: Andreas Schnitzerling
>              Labels: authentication, cleanup, consistency, cql3, newbie, 
> nodetool, permissions
>             Fix For: 2.0.4
>
>
> After a cleanup I loose permissions (f.e. SELECT, MODIFY). When I listed the 
> system_auth/permissions CF after cleanup I recognized, around the half of all 
> permissions lost - BUT: If I list the permissions table with consistency ALL, 
> all entries appear again and my programm continues working. Only if I manual 
> trigger that read-repair! That tells me indirect, that system_auth is reading 
> using consistency ONE, what causes problems after cleanup (?). A good 
> approach (?) could be to re-read system_auth after permission fail with 
> consistency > ONE to trigger read-repair once and keep speed.



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