This may be slightly off topic, but your "longest contiguous common 
subsequence" problem sounds like the "longest common substring" problem. 
 Your code uses the dynamic programming solution, which is O(M*N), but 
there are O(M+N) algorithms that might be faster depending on the length 
and "alphabet" of your input sequences.

On Monday, February 18, 2013 11:16:51 PM UTC-5, Geo wrote:
>
> Hello,
>
> I am cross-posting my Clojure question from StackOverflow.  I am trying to 
> get an algorithm in Clojure to match Java speed and managed to get the 
> performance to within one order of magnitude and wondering if more is 
> possible. The full question is here:
>
>
> http://stackoverflow.com/questions/14949705/clojure-performance-for-expensive-algorithms
>
> Thank you.
>

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