One of the best ways to learn clojure is to take a look at the minimal and 
excellent source code: 


http://clojuredocs.org/clojure_core/clojure.core/cons
(def
 ^{:arglists '([x seq])
    :doc "Returns a new seq where x is the first element and seq is
    the rest."
   :added "1.0"
   :static true}

 cons (fn* ^:static cons [x seq] (. clojure.lang.RT (cons x seq))))


calls:
https://github.com/clojure/clojure/blob/master/src/jvm/clojure/lang/RT.java

static public ISeq cons(Object x, Object coll){
//ISeq y = seq(coll);
if(coll == null)
return new PersistentList(x);
else if(coll instanceof ISeq)
return new Cons(x, (ISeq) coll);
else
return new Cons(x, seq(coll));
}

You can see it creates a new list.  Not sure why conceptually, but there it 
is.

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