Robert McIntyre <r...@mit.edu> writes: > I'm wondering if people have had experience with java libraries of > that sort and might have some recommendations. > > Anyone use clojure for scientific data analysis? What do you find > helpful to use?
I'm still just evaluating clojure for scientific data analysis, but I can share what I've found so far. First of all, Incanter. I like the idea of Incanter, but I don't like its decision to have matrices be the fundamental data object. Matrices are great, but they not the be-all and end-all. Multidimensional arrays are better, like in numpy or APL or J. It's a pet peeve about R that it doesn't distinguish scalars from vectors of length 1. (Konrad Hinsen had started some work on multiarrays in Clojure, but I've not been following his progress.) Also, Incanter seems very tuned to a row-wise view of data sets, while I've spent enough time with R and kdb+/q to prefer a column-wise view of data. (This is just based on reading the Incanter docs quickly; I may be misrepresenting the package.) As far as matrix libraries go, I've settled on EJML, since it seems reasonably fast, and I can understand what it's doing. Bradford Cross blogged a comparison of different libraries at: http://measuringmeasures.com/blog/2010/3/28/matrix-benchmarks-fast-linear-algebra-on-the-jvm.html I can't seem to find a good Java multiarray library, but I have some hope that I could beat EJML into shape, since its representation is just a basic array of doubles. I've built the Java interface to HDF5, and I've been using that for data storage. I would prefer to use a pure-Java solution, but I can't find anything that's nearly as good. Maybe I'm not reading the right news, but I've not seen all that much on using Java for scientific work for a while now. The NIST JavaNumerics guys seem to have given up, but if I remember correctly their conclusions were that Java really needed complex numbers as a value/stack-allocated type. This is a bit of a disjointed ramble, but I'd love to hear what you settle on. Regards, Johann -- You received this message because you are subscribed to the Google Groups "Clojure" group. To post to this group, send email to clojure@googlegroups.com Note that posts from new members are moderated - please be patient with your first post. To unsubscribe from this group, send email to clojure+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/clojure?hl=en
