I've discovered a weird behaviour which I don't understand and can't seem 
to fix - it's probably some obvious mistake of my own.

Brief background, I'm trying to integrate cloverage with codox, so that I 
can show test coverage reports on my documentation pages. Both of these are 
established, solid, well written packages by respected members of the 
community.

Cloverage (1.3.0-SNAPSHOT) depends on clojure.tools.cli version 0.4.2. When 
you start a repl within the cloverage/cloverage directory and attempt to 
use clojure.tools.cli, no problem:

    cloverage.coverage=> (use 'clojure.tools.cli)
    nil

Codox 0.10.7 does not depend on clojure.tools.cli, but my mildly modified 
version of codox does depend on cloverage 1.3.0-SNAPSHOT (that is literally 
the only change to the codox project.clj). When you start a repl within the 
codox/codox directory, and attempt to use clojure.tools.cli, you get:

    user=> (use 'clojure.tools.cli)
    CompilerException java.lang.RuntimeException: No such var: 
s/starts-with?, compiling:(clojure/tools/cli.cljc:97:8) 

OK, so, it's picking up clojure.tools.cli at all presumably via the 
dependency on cloverage, which is good. but clojure.tools.cli requires 
clojure.string as `s`, see
https://github.com/clojure/tools.cli/blob/master/src/main/clojure/clojure/tools/cli.cljc#L12
 

so you would have thought this would all work fine.

So what happens if I require clojure.string as `s` in the repl? Well, I get 
a different error:

    user=> (require '[clojure.string :as s])
    nil
    user=> (use 'clojure.tools.cli)
    CompilerException java.lang.Exception: namespace 'clojure.tools.cli' 
not found, compiling:(/tmp/form-init1843820122884430414.clj:1:1) 

So, can anyone explain what is going on here, and how I fix it? it matters 
to me, because it prevents my code from compiling:

    user=> (use 'codox.cloverage-integration.runner :reload)
    CompilerException java.lang.RuntimeException: No such var: 
s/starts-with?, compiling:(clojure/tools/cli.cljc:97:8) 

In case anyone's interested, my current diff with respect to weavejester's 
current codox is here: 
https://github.com/simon-brooke/codox/commit/ef4ba70659c768f1aab4bfbf32efdaa48e9c43a8

Thanks in advance for any help or thoughts!


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