I just tripped over this and
opened https://issues.apache.org/jira/browse/MSHADE-272 . Affected users
might like to vote it up.
FWIW, my workaround:
<plugin>
<artifactId>maven-shade-plugin</artifactId>
<executions>
<execution>
<configuration>
...
<filters>
<filter>
<artifact>*:*</artifact>
<includes>
<include>**/*.class</include>
<include>**/*.properties</include>
<!-- Conditionally loaded,
clojure.jar doesn't have a compiled version. -->
<include>clojure/core_instant18.clj</include>
</includes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
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