I also tried to do a build without usiong the external ffmpeg and that make 
went thruough without errors but the make install had the following errors
so now I have no cinelerra on my ubuntu 12.10 at all :(

libtool: relink: gcc -shared  -fPIC -DPIC  .libs/atom.o .libs/avcc.o 
.libs/avi_hdrl.o .libs/avi_idx1.o .libs/avi_movi.o .libs/avi_strl.o 
.libs/avi_odml.o .libs/avi_ix.o .libs/avi_indx.o .libs/avi_riff.o 
.libs/cmodel_default.o .libs/cmodel_float.o .libs/cmodel_yuv420p.o 
.libs/cmodel_yuv422.o .libs/codecs.o .libs/colormodels.o .libs/ctab.o 
.libs/dinf.o .libs/dref.o .libs/edts.o .libs/elst.o .libs/esds.o 
.libs/graphics.o .libs/hdlr.o .libs/ima4.o .libs/interlacemodes.o .libs/jpeg.o 
.libs/libdv.o .libs/libmjpeg.o .libs/matrix.o .libs/mdat.o .libs/mdhd.o 
.libs/mdia.o .libs/minf.o .libs/moov.o .libs/mp4a.o .libs/mvhd.o .libs/plugin.o 
.libs/qtcache.o .libs/qtdv.o .libs/qtffmpeg.o .libs/qth264.o .libs/qtpng.o 
.libs/qtmp3.o .libs/quicktime.o .libs/raw.o .libs/rawaudio.o .libs/rle.o 
.libs/smhd.o .libs/sowt.o .libs/stbl.o .libs/stco.o .libs/stsc.o .libs/stsd.o 
.libs/stsdtable.o .libs/stss.o .libs/stsz.o .libs/stts.o .libs/tkhd.o 
.libs/trak.o .libs/twos.o .libs/udta.o .libs/ulaw.o .libs/util.o .libs/v308.o 
.libs/v408.o .libs/v410.o .libs/vmhd.o .libs/vbraudio.o .libs/vorbis.o 
.libs/workarounds.o .libs/yuv2.o .libs/yuv4.o .libs/yv12.o .libs/wmx2.o 
.libs/wma.o .libs/mpeg4.o  -Wl,--whole-archive encore50/.libs/libencore.a 
-Wl,--no-whole-archive  -L../quicktime/ffmpeg/libavcodec -lavcodec-cinelerra 
-L../quicktime/ffmpeg/libavutil -lavutil-cinelerra -L/usr/lib/i386-linux-gnu 
-lvorbisenc -lvorbisfile -lvorbis -ltheora -logg /usr/local/lib/libmp3lame.a 
-lfaad -lfaac -L/usr/local/lib -lmpeg3hv -lx264 -ldv -ljpeg -lpng -lz -lm -ldl 
-lpthread  -O2 -Wl,--no-undefined   -Wl,-soname -Wl,libquicktimehv-1.6.0.so.1 
-o .libs/libquicktimehv-1.6.0.so.1.0.0
.libs/qth264.o: In function `encode':
/home/judget/cinelerra-cv/quicktime/qth264.c:158: undefined reference to 
`x264_encoder_open_128'
collect2: error: ld returned 1 exit status
libtool: install: error: relink `libquicktimehv.la' with the above command 
before installing it
make[3]: *** [install-libLTLIBRARIES] Error 1
make[3]: Leaving directory `/home/judget/cinelerra-cv/quicktime'
make[2]: *** [install-am] Error 2
make[2]: Leaving directory `/home/judget/cinelerra-cv/quicktime'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/judget/cinelerra-cv/quicktime'
make: *** [install-recursive] Error 1
judget@tjlaptop:~/cinelerra-cv$ 

-- 

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