Changeset: 7c95938cb114 for MonetDB
URL: http://dev.monetdb.org/hg/MonetDB?cmd=changeset;node=7c95938cb114
Added Files:
        debian/monetdb-python2.install
        sql/backends/monet5/Tests/shutdown.py
        sql/backends/monet5/Tests/shutdown.stable.err
        sql/backends/monet5/Tests/shutdown.stable.out
        sql/backends/monet5/UDF/pyapi/conversion.c
        sql/backends/monet5/UDF/pyapi/conversion.h
        sql/backends/monet5/UDF/pyapi/pyheader.h
        sql/backends/monet5/UDF/pyapi/undef.h
        sql/test/BugTracker-2016/Tests/case-column-when-null-Bug-6124.sql
        sql/test/BugTracker-2016/Tests/case-column-when-null-Bug-6124.stable.err
        sql/test/BugTracker-2016/Tests/case-column-when-null-Bug-6124.stable.out
        
sql/test/BugTracker-2016/Tests/column_name_lost_in_in_operator.Bug-6123.sql
        
sql/test/BugTracker-2016/Tests/column_name_lost_in_in_operator.Bug-6123.stable.err
        
sql/test/BugTracker-2016/Tests/column_name_lost_in_in_operator.Bug-6123.stable.out
        sql/test/BugTracker-2016/Tests/nested-subquery-in-select.Bug-6125.sql
        
sql/test/BugTracker-2016/Tests/nested-subquery-in-select.Bug-6125.stable.err
        
sql/test/BugTracker-2016/Tests/nested-subquery-in-select.Bug-6125.stable.out
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6119.sql
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6119.stable.err
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6119.stable.out
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6121.sql
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6121.stable.err
        sql/test/BugTracker-2016/Tests/select-in-from.Bug-6121.stable.out
        tools/mserver/shutdowntest.c
Removed Files:
        sql/backends/monet5/UDF/pyapi/unspecified_evil.h
Modified Files:
        MonetDB.spec
        buildtools/ChangeLog.Dec2016
        clients/Tests/MAL-signatures.stable.out
        clients/Tests/MAL-signatures.stable.out.int128
        clients/Tests/exports.stable.out
        configure.ag
        debian/control
        debian/monetdb-client-testing.install
        debian/monetdb5-server.install
        debian/rules
        gdk/ChangeLog
        gdk/ChangeLog.Dec2016
        gdk/gdk.h
        gdk/gdk_align.c
        gdk/gdk_bat.c
        gdk/gdk_batop.c
        gdk/gdk_bbp.c
        gdk/gdk_calc.c
        gdk/gdk_calc_compare.h
        gdk/gdk_hash.h
        gdk/gdk_join.c
        gdk/gdk_logger.c
        gdk/gdk_project.c
        gdk/gdk_search.c
        gdk/gdk_system.c
        gdk/gdk_utils.c
        gdk/gdk_utils.h
        monetdb5/extras/mal_optimizer_template/Tests/opt_sql_append.stable.out
        monetdb5/extras/rapi/Tests/rapi02.stable.out
        monetdb5/extras/rapi/rapi.R
        monetdb5/mal/mal.c
        monetdb5/mal/mal.h
        monetdb5/mal/mal_debugger.c
        monetdb5/mal/mal_instruction.c
        monetdb5/mal/mal_instruction.h
        monetdb5/mal/mal_module.c
        monetdb5/mal/mal_module.h
        monetdb5/mal/mal_profiler.c
        monetdb5/mal/mal_session.c
        monetdb5/mal/mal_stack.c
        monetdb5/modules/atoms/json.c
        monetdb5/modules/atoms/mtime.c
        monetdb5/modules/kernel/aggr.mal
        monetdb5/modules/kernel/aggr.mal.sh
        monetdb5/modules/kernel/algebra.mal
        monetdb5/modules/kernel/bat5.c
        monetdb5/modules/kernel/bat5.h
        monetdb5/modules/kernel/bat5.mal
        monetdb5/modules/mal/Tests/inspect05.stable.out.int128
        monetdb5/modules/mal/inspect.c
        monetdb5/modules/mal/manual.c
        monetdb5/modules/mal/mat.c
        monetdb5/modules/mal/pcre.c
        monetdb5/modules/mal/tablet.c
        monetdb5/optimizer/Tests/GCexample01.stable.out
        monetdb5/optimizer/Tests/dataflow3.stable.out
        monetdb5/optimizer/opt_aliases.c
        monetdb5/optimizer/opt_candidates.c
        monetdb5/optimizer/opt_emptybind.c
        monetdb5/optimizer/opt_garbageCollector.c
        monetdb5/optimizer/opt_jit.c
        monetdb5/optimizer/opt_matpack.c
        monetdb5/optimizer/opt_multiplex.c
        monetdb5/optimizer/opt_pipes.c
        monetdb5/optimizer/opt_prelude.c
        monetdb5/optimizer/opt_pushselect.c
        monetdb5/optimizer/opt_querylog.c
        monetdb5/optimizer/opt_support.c
        monetdb5/optimizer/opt_wrapper.c
        sql/backends/monet5/Tests/All
        sql/backends/monet5/Tests/pyapi09.sql
        sql/backends/monet5/Tests/pyapi21.sql
        sql/backends/monet5/UDF/cudf/Tests/udf-fuse.stable.out
        sql/backends/monet5/UDF/cudf/Tests/udf-reverse.stable.out
        sql/backends/monet5/UDF/pyapi/Makefile.ag
        sql/backends/monet5/UDF/pyapi/connection.c
        sql/backends/monet5/UDF/pyapi/connection.h
        sql/backends/monet5/UDF/pyapi/convert_loops.h
        sql/backends/monet5/UDF/pyapi/emit.c
        sql/backends/monet5/UDF/pyapi/formatinput.c
        sql/backends/monet5/UDF/pyapi/formatinput.h
        sql/backends/monet5/UDF/pyapi/pyapi.c
        sql/backends/monet5/UDF/pyapi/pyapi.h
        sql/backends/monet5/UDF/pyapi/pyloader.c
        sql/backends/monet5/UDF/pyapi/pytypes.c
        sql/backends/monet5/UDF/pyapi/pytypes.h
        sql/backends/monet5/UDF/pyapi/type_conversion.c
        sql/backends/monet5/UDF/pyapi/type_conversion.h
        sql/backends/monet5/UDF/pyapi/unicode.c
        sql/backends/monet5/UDF/pyapi/unicode.h
        sql/backends/monet5/rel_bin.c
        sql/backends/monet5/sql.c
        sql/backends/monet5/sql_execute.c
        sql/backends/monet5/sql_gencode.c
        sql/backends/monet5/sql_optimizer.c
        sql/server/rel_exp.c
        sql/server/rel_exp.h
        sql/server/rel_optimizer.c
        sql/server/rel_rel.c
        sql/server/rel_select.c
        sql/storage/bat/bat_storage.c
        sql/storage/bat/bat_table.c
        sql/storage/store.c
        sql/test/BugTracker-2009/Tests/POWER_vs_prod.SF-2596114.stable.out
        
sql/test/BugTracker-2009/Tests/segfault_when_quitting_debugger.SF-2538837.stable.out
        
sql/test/BugTracker-2010/Tests/LIMIT_OFFSET_big-endian.Bug-2622.stable.out
        sql/test/BugTracker-2010/Tests/group-by_ordered_column.Bug-2564.sql
        
sql/test/BugTracker-2010/Tests/group-by_ordered_column.Bug-2564.stable.out
        sql/test/BugTracker-2011/Tests/crash_on_alias.Bug-2798.sql
        sql/test/BugTracker-2011/Tests/crash_on_alias.Bug-2798.stable.out.int128
        sql/test/BugTracker-2011/Tests/func_iter_vs_bulk.Bug-2826.sql
        sql/test/BugTracker-2011/Tests/func_iter_vs_bulk.Bug-2826.stable.out
        
sql/test/BugTracker-2012/Tests/rewrite_like_into_likesubselect.Bug-3179.stable.out
        sql/test/BugTracker-2013/Tests/between.Bug-3259.sql
        sql/test/BugTracker-2013/Tests/between.Bug-3259.stable.out.int128
        sql/test/BugTracker-2014/Tests/manifold.Bug-3556.stable.out
        sql/test/BugTracker-2014/Tests/nil_2dec_lng.Bug-3592.sql
        sql/test/BugTracker-2014/Tests/nil_2dec_lng.Bug-3592.stable.out
        sql/test/BugTracker-2014/Tests/nil_2dec_lng.Bug-3592.stable.out.single
        sql/test/BugTracker-2014/Tests/querylog.Bug-3607.stable.out
        sql/test/BugTracker-2015/Tests/crash.Bug-3736.stable.out
        sql/test/BugTracker-2015/Tests/useless_casts.Bug-3756.sql
        sql/test/BugTracker-2015/Tests/useless_casts.Bug-3756.stable.out
        sql/test/BugTracker-2016/Tests/All
        sql/test/BugTracker-2016/Tests/decimal_vs_integer.Bug-3941.stable.out
        sql/test/BugTracker-2016/Tests/storagemodel.stable.out
        sql/test/BugTracker-2016/Tests/storagemodel.stable.out.int128
        sql/test/BugTracker/Tests/explain.SF-1739353.stable.out
        sql/test/BugTracker/Tests/jdbc_no_debug.SF-1739356.stable.out
        sql/test/Tests/setoptimizer.stable.out
        sql/test/Tests/setoptimizer.stable.out.Windows
        sql/test/mapi/Tests/sql_int128.stable.out
        sql/test/mergetables/Tests/mergequery.stable.out
        sql/test/remote/Tests/partition_elim.stable.out
        tools/mserver/Makefile.ag
        tools/mserver/monet_version.c.in
Branch: data-vaults
Log Message:

Merge with default


diffs (truncated from 14444 to 300 lines):

diff --git a/MonetDB.spec b/MonetDB.spec
--- a/MonetDB.spec
+++ b/MonetDB.spec
@@ -87,6 +87,16 @@
 %endif
 %endif
 
+# If the _without_pyintegration macro is not set, the MonetDB-python2
+# RPM will be created.  The macro can be set when using mock by
+# passing it the flag --without=pyintegration.
+# On RHEL 6, numpy is too old.
+%if %{?rhel:0}%{!?rhel:1} || 0%{?rhel} >= 7
+%if %{?_without_pyintegration:0}%{!?_without_pyintegration:1}
+%define with_pyintegration 1
+%endif
+%endif
+
 %if %{fedpkgs}
 # If the _with_fits macro is set, the MonetDB-cfitsio RPM will be
 # created.  The macro can be set when using mock by passing it the
@@ -146,7 +156,6 @@ BuildRequires: libuuid-devel
 BuildRequires: libxml2-devel
 BuildRequires: openssl-devel
 BuildRequires: pcre-devel >= 4.5
-BuildRequires: python-devel
 BuildRequires: readline-devel
 BuildRequires: unixODBC-devel
 # BuildRequires: uriparser-devel
@@ -154,6 +163,20 @@ BuildRequires: zlib-devel
 %if %{?with_samtools:1}%{!?with_samtools:0}
 BuildRequires: samtools-devel
 %endif
+%if %{?with_pyintegration:1}%{!?with_pyintegration:0}
+BuildRequires: python-devel
+%if %{?rhel:1}%{!?rhel:0}
+# RedHat Enterprise Linux calls it simply numpy
+BuildRequires: numpy
+%else
+%if (0%{?fedora} >= 24)
+BuildRequires: python2-numpy
+%else
+# Fedora <= 23 doesn't have python2-numpy
+BuildRequires: numpy
+%endif
+%endif
+%endif
 %if %{?with_rintegration:1}%{!?with_rintegration:0}
 BuildRequires: R-core-devel
 %endif
@@ -387,6 +410,7 @@ developer.
 %{_bindir}/sample4
 %{_bindir}/smack00
 %{_bindir}/smack01
+%{_bindir}/shutdowntest
 %{_bindir}/testgetinfo
 %{_bindir}/malsample.pl
 %{_bindir}/sqlsample.php
@@ -509,6 +533,32 @@ install it.
 %{_libdir}/monetdb5/lib_rapi.so
 %endif
 
+%if %{?with_pyintegration:1}%{!?with_pyintegration:0}
+%package python2
+Summary: Integration of MonetDB and Python, allowing use of Python from within 
SQL
+Group: Applications/Databases
+Requires: MonetDB-SQL-server5%{?_isa} = %{version}-%{release}
+
+%description python2
+MonetDB is a database management system that is developed from a
+main-memory perspective with use of a fully decomposed storage model,
+automatic index management, extensibility of data types and search
+accelerators.  It also has an SQL frontend.
+
+This package contains the interface to use the Python language from
+within SQL queries.  This package is for Python 2.
+
+NOTE: INSTALLING THIS PACKAGE OPENS UP SECURITY ISSUES.  If you don't
+know how this package affects the security of your system, do not
+install it.
+
+%files python2
+%defattr(-,root,root)
+%{_libdir}/monetdb5/pyapi.*
+%{_libdir}/monetdb5/autoload/*_pyapi.mal
+%{_libdir}/monetdb5/lib_pyapi.so
+%endif
+
 %if %{?with_fits:1}%{!?with_fits:0}
 %package cfitsio
 Summary: MonetDB: Add on module that provides support for FITS files
@@ -537,7 +587,6 @@ Summary: MonetDB - Monet Database Manage
 Group: Applications/Databases
 Requires(pre): shadow-utils
 Requires: %{name}-client%{?_isa} = %{version}-%{release}
-Obsoletes: MonetDB5-server-rdf
 %if (0%{?fedora} >= 22)
 Recommends: %{name}-SQL-server5%{?_isa} = %{version}-%{release}
 %if %{bits} == 64
@@ -597,6 +646,9 @@ fi
 %if %{?with_lidar:1}%{!?with_lidar:0}
 %exclude %{_libdir}/monetdb5/lidar.mal
 %endif
+%if %{?with_pyintegration:1}%{!?with_pyintegration:0}
+%exclude %{_libdir}/monetdb5/pyapi.mal
+%endif
 %if %{?with_rintegration:1}%{!?with_rintegration:0}
 %exclude %{_libdir}/monetdb5/rapi.mal
 %endif
@@ -613,6 +665,9 @@ fi
 %if %{?with_lidar:1}%{!?with_lidar:0}
 %exclude %{_libdir}/monetdb5/autoload/*_lidar.mal
 %endif
+%if %{?with_pyintegration:1}%{!?with_pyintegration:0}
+%exclude %{_libdir}/monetdb5/autoload/*_pyapi.mal
+%endif
 %if %{?with_rintegration:1}%{!?with_rintegration:0}
 %exclude %{_libdir}/monetdb5/autoload/*_rapi.mal
 %endif
@@ -625,6 +680,9 @@ fi
 %if %{?with_lidar:1}%{!?with_lidar:0}
 %exclude %{_libdir}/monetdb5/lib_lidar.so
 %endif
+%if %{?with_pyintegration:1}%{!?with_pyintegration:0}
+%exclude %{_libdir}/monetdb5/lib_pyapi.so
+%endif
 %if %{?with_rintegration:1}%{!?with_rintegration:0}
 %exclude %{_libdir}/monetdb5/lib_rapi.so
 %endif
@@ -692,8 +750,6 @@ Requires: MonetDB5-server%{?_isa} = %{ve
 # RHEL >= 7, and all current Fedora
 Requires: %{_bindir}/systemd-tmpfiles
 %endif
-Obsoletes: MonetDB-SQL-devel
-Obsoletes: %{name}-SQL
 %if (0%{?fedora} >= 22)
 %if %{bits} == 64
 Recommends: %{name}-SQL-server5-hugeint%{?_isa} = %{version}-%{release}
@@ -784,7 +840,6 @@ frontend of MonetDB.
 %package testing
 Summary: MonetDB - Monet Database Management System
 Group: Applications/Databases
-Obsoletes: MonetDB-python
 
 %description testing
 MonetDB is a database management system that is developed from a
@@ -847,12 +902,12 @@ developer, but if you do want to test, t
        --enable-int128=%{?with_int128:yes}%{!?with_int128:no} \
        --enable-lidar=%{?with_lidar:yes}%{!?with_lidar:no} \
        --enable-mapi=yes \
-       --enable-microhttpd=no \
        --enable-monetdb5=yes \
        --enable-netcdf=no \
        --enable-odbc=yes \
        --enable-optimize=yes \
        --enable-profile=no \
+       
--enable-pyintegration=%{?with_pyintegration:yes}%{!?with_pyintegration:no} \
        
--enable-rintegration=%{?with_rintegration:yes}%{!?with_rintegration:no} \
        --enable-shp=no \
        --enable-sql=yes \
@@ -868,7 +923,8 @@ developer, but if you do want to test, t
        --with-openssl=yes \
        --with-proj=no \
        --with-pthread=yes \
-       --with-python=yes \
+       --with-python2=yes \
+       --with-python3=no \
        --with-readline=yes \
        --with-samtools=%{?with_samtools:yes}%{!?with_samtools:no} \
        --with-sphinxclient=no \
diff --git a/buildtools/ChangeLog.Dec2016 b/buildtools/ChangeLog.Dec2016
--- a/buildtools/ChangeLog.Dec2016
+++ b/buildtools/ChangeLog.Dec2016
@@ -1,6 +1,10 @@
 # ChangeLog file for buildtools
 # This file is updated with Maddlog
 
+* Tue Dec  6 2016 Sjoerd Mullender <sjo...@acm.org>
+- New packages MonetDB-python2 (Fedora) and monetdb-python2 (Debian/Ubuntu)
+  have been created for Python 2 integration into MonetDB.
+
 * Tue Jul 19 2016 Stefan Manegold <stefan.maneg...@cwi.nl>
 - With OID size equal to ABI/word size, mserver5 does not need to print
   the OID size, anymore.
diff --git a/clients/Tests/MAL-signatures.stable.out 
b/clients/Tests/MAL-signatures.stable.out
--- a/clients/Tests/MAL-signatures.stable.out
+++ b/clients/Tests/MAL-signatures.stable.out
@@ -537,6 +537,8 @@ Ready.
 [ "bam",       "sam_export",   "pattern bam.sam_export(output_path:str):void 
",        "sam_exportf;", "Export results in the bam.export table to a SAM 
file"  ]
 [ "bam",       "seq_char",     "command 
bam.seq_char(ref_pos:int,alg_seq:str,alg_pos:int,alg_cigar:str):str ", 
"seq_char;",    "Calculate the character in the alignment string (alg_str) that 
is aligned to position 'ref_pos', conforming to the given cigar string" ]
 [ "bam",       "seq_length",   "command bam.seq_length(cigar:str):int ",       
"seq_length;",  "Calculate the real length of a DNA sequence, given its CIGAR 
string."  ]
+[ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],s:bat[:oid],force:bit):bat[:any_1] ",   
"BKCappend_cand_force_wrap;",   "append the content of u with candidate list s 
to i"    ]
+[ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],s:bat[:oid]):bat[:any_1] ",     
"BKCappend_cand_wrap;", "append the content of u with candidate list s to i"    
]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],force:bit):bat[:any_1] ",       
"BKCappend_force_wrap;",        "append the content of u to i"  ]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:any_1,force:bit):bat[:any_1] ",     
"BKCappend_val_force_wrap;",    "append the value u to i"       ]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:any_1):bat[:any_1] ",       "BKCappend_val_wrap;",  
"append the value u to i"       ]
@@ -599,7 +601,7 @@ Ready.
 [ "bat",       "setColumn",    "command 
bat.setColumn(b:bat[:any_1],t:str):void ",     "BKCsetColumn;",        "Give a 
logical name to the tail column of a BAT."      ]
 [ "bat",       "setHash",      "command bat.setHash(b:bat[:any_1]):bit ",      
"BKCsetHash;",  "Create a hash structure on the column" ]
 [ "bat",       "setImprints",  "command bat.setImprints(b:bat[:any_1]):bit ",  
"BKCsetImprints;",      "Create an imprints structure on the column"    ]
-[ "bat",       "setKey",       "command 
bat.setKey(b:bat[:any_1],mode:bit):bat[:any_1] ",      "BKCsetkey;",   "Sets 
the 'key' property of the tail column to 'mode'. In 'key' mode, \n        the 
kernel will silently block insertions that cause a duplicate \n        entries 
in the head column. KNOWN BUG:when 'key' is set to TRUE, this \n\t\tfunction 
does not automatically eliminate duplicates. "  ]
+[ "bat",       "setKey",       "command 
bat.setKey(b:bat[:any_1],mode:bit):bat[:any_1] ",      "BKCsetkey;",   "Sets 
the 'key' property of the tail column to 'mode'. In 'key' mode,\n        the 
kernel will silently block insertions that cause a duplicate\n        entry in 
the head column."     ]
 [ "bat",       "setName",      "command bat.setName(b:bat[:any_1],s:str):void 
",       "BKCsetName;",  "Give a logical name to a BAT. "        ]
 [ "bat",       "setPersistent",        "command 
bat.setPersistent(b:bat[:any_1]):void ",       "BKCsetPersistent;",    "Make 
the BAT persistent."      ]
 [ "bat",       "setTransient", "command bat.setTransient(b:bat[:any_1]):void 
",        "BKCsetTransient;",     "Make the BAT transient.  Returns \n\tboolean 
which indicates if the\nBAT administration has indeed changed."   ]
diff --git a/clients/Tests/MAL-signatures.stable.out.int128 
b/clients/Tests/MAL-signatures.stable.out.int128
--- a/clients/Tests/MAL-signatures.stable.out.int128
+++ b/clients/Tests/MAL-signatures.stable.out.int128
@@ -641,6 +641,8 @@ Ready.
 [ "bam",       "sam_export",   "pattern bam.sam_export(output_path:str):void 
",        "sam_exportf;", "Export results in the bam.export table to a SAM 
file"  ]
 [ "bam",       "seq_char",     "command 
bam.seq_char(ref_pos:int,alg_seq:str,alg_pos:int,alg_cigar:str):str ", 
"seq_char;",    "Calculate the character in the alignment string (alg_str) that 
is aligned to position 'ref_pos', conforming to the given cigar string" ]
 [ "bam",       "seq_length",   "command bam.seq_length(cigar:str):int ",       
"seq_length;",  "Calculate the real length of a DNA sequence, given its CIGAR 
string."  ]
+[ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],s:bat[:oid],force:bit):bat[:any_1] ",   
"BKCappend_cand_force_wrap;",   "append the content of u with candidate list s 
to i"    ]
+[ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],s:bat[:oid]):bat[:any_1] ",     
"BKCappend_cand_wrap;", "append the content of u with candidate list s to i"    
]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:bat[:any_1],force:bit):bat[:any_1] ",       
"BKCappend_force_wrap;",        "append the content of u to i"  ]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:any_1,force:bit):bat[:any_1] ",     
"BKCappend_val_force_wrap;",    "append the value u to i"       ]
 [ "bat",       "append",       "command 
bat.append(i:bat[:any_1],u:any_1):bat[:any_1] ",       "BKCappend_val_wrap;",  
"append the value u to i"       ]
@@ -705,7 +707,7 @@ Ready.
 [ "bat",       "setColumn",    "command 
bat.setColumn(b:bat[:any_1],t:str):void ",     "BKCsetColumn;",        "Give a 
logical name to the tail column of a BAT."      ]
 [ "bat",       "setHash",      "command bat.setHash(b:bat[:any_1]):bit ",      
"BKCsetHash;",  "Create a hash structure on the column" ]
 [ "bat",       "setImprints",  "command bat.setImprints(b:bat[:any_1]):bit ",  
"BKCsetImprints;",      "Create an imprints structure on the column"    ]
-[ "bat",       "setKey",       "command 
bat.setKey(b:bat[:any_1],mode:bit):bat[:any_1] ",      "BKCsetkey;",   "Sets 
the 'key' property of the tail column to 'mode'. In 'key' mode, \n        the 
kernel will silently block insertions that cause a duplicate \n        entries 
in the head column. KNOWN BUG:when 'key' is set to TRUE, this \n\t\tfunction 
does not automatically eliminate duplicates. "  ]
+[ "bat",       "setKey",       "command 
bat.setKey(b:bat[:any_1],mode:bit):bat[:any_1] ",      "BKCsetkey;",   "Sets 
the 'key' property of the tail column to 'mode'. In 'key' mode,\n        the 
kernel will silently block insertions that cause a duplicate\n        entry in 
the head column."     ]
 [ "bat",       "setName",      "command bat.setName(b:bat[:any_1],s:str):void 
",       "BKCsetName;",  "Give a logical name to a BAT. "        ]
 [ "bat",       "setPersistent",        "command 
bat.setPersistent(b:bat[:any_1]):void ",       "BKCsetPersistent;",    "Make 
the BAT persistent."      ]
 [ "bat",       "setTransient", "command bat.setTransient(b:bat[:any_1]):void 
",        "BKCsetTransient;",     "Make the BAT transient.  Returns \n\tboolean 
which indicates if the\nBAT administration has indeed changed."   ]
diff --git a/clients/Tests/exports.stable.out b/clients/Tests/exports.stable.out
--- a/clients/Tests/exports.stable.out
+++ b/clients/Tests/exports.stable.out
@@ -19,7 +19,7 @@ int ATOMlen(int id, const void *v);
 str ATOMname(int id);
 ptr ATOMnil(int id);
 int ATOMprint(int id, const void *val, stream *fd);
-gdk_return BATappend(BAT *b, BAT *c, bit force);
+gdk_return BATappend(BAT *b, BAT *n, BAT *s, bit force);
 void BATassertProps(BAT *b);
 atomDesc BATatoms[];
 BAT *BATattach(int tt, const char *heapfile, int role);
@@ -144,6 +144,7 @@ gdk_return BATimprints(BAT *b);
 BAT *BATintersectcand(BAT *a, BAT *b);
 gdk_return BATjoin(BAT **r1p, BAT **r2p, BAT *l, BAT *r, BAT *sl, BAT *sr, int 
nil_matches, BUN estimate);
 gdk_return BATkey(BAT *b, int onoff);
+int BATkeyed(BAT *b);
 gdk_return BATleftjoin(BAT **r1p, BAT **r2p, BAT *l, BAT *r, BAT *sl, BAT *sr, 
int nil_matches, BUN estimate);
 void *BATmax(BAT *b, void *aggr);
 size_t BATmemsize(BAT *b, int dirty);
@@ -263,7 +264,7 @@ void *GDKrealloc(void *pold, size_t size
 void GDKregister(MT_Id pid);
 gdk_return GDKreleasemmap(void *ptr, size_t size, size_t id, str *msg);
 gdk_return GDKreleasesem(int sem_id, str *msg);
-void GDKreset(int status);
+void GDKreset(int status, int exit);
 void GDKsetenv(str name, str value);
 void GDKsetmemorylimit(lng nbytes);
 ssize_t GDKstrFromStr(unsigned char *dst, const unsigned char *src, ssize_t 
len);
@@ -778,6 +779,8 @@ str BATXMLstr2xml(bat *ret, const bat *b
 str BATXMLxml2str(bat *ret, const bat *bid);
 str BATXMLxmltext(bat *ret, const bat *bid);
 str BATXMLxquery(bat *ret, const bat *bid, const char *const *expr);
+str BKCappend_cand_force_wrap(bat *r, const bat *bid, const bat *uid, const 
bat *sid, const bit *force);
+str BKCappend_cand_wrap(bat *r, const bat *bid, const bat *uid, const bat 
*sid);
 str BKCappend_force_wrap(bat *r, const bat *bid, const bat *uid, const bit 
*force);
 str BKCappend_val_force_wrap(bat *r, const bat *bid, const void *u, const bit 
*force);
 str BKCappend_val_wrap(bat *r, const bat *bid, const void *u);
@@ -2043,6 +2046,7 @@ void freeException(str);
 void freeInstruction(InstrPtr p);
 void freeMalBlk(MalBlkPtr mb);
 void freeModule(Module cur);
+void freeModuleList(Module *list);
 void freeStack(MalStkPtr stk);
 void freeSymbol(Symbol s);
 void freeSymbolList(Symbol s);
@@ -2077,7 +2081,7 @@ int getIntConstant(MalBlkPtr mb, int val
 int getLngConstant(MalBlkPtr mb, lng val);
 MalBlkPtr getMalBlkHistory(MalBlkPtr mb, int idx);
 lng getMemoryClaim(MalBlkPtr mb, MalStkPtr stk, InstrPtr pci, int i, int flag);
-Module getModuleChain(void);
+void getModuleList(Module **out, int *length);
 str getName(const char *nme);
 str getNameLen(const char *nme, size_t len);
 int getOidConstant(MalBlkPtr mb, oid val);
@@ -2197,6 +2201,7 @@ MT_Lock mal_delayLock;
 void mal_exit(void);
 void mal_factory_reset(void) __attribute__((__visibility__("hidden")));
 int mal_init(void);
+void mal_instruction_reset(void);
 void mal_linker_reset(void) __attribute__((__visibility__("hidden")));
 void mal_module_reset(void) __attribute__((__visibility__("hidden")));
 void mal_namespace_reset(void) __attribute__((__visibility__("hidden")));
@@ -2205,6 +2210,7 @@ str mal_quote(const char *msg, size_t si
 MT_Lock mal_remoteLock;
 void mal_resource_reset(void) __attribute__((__visibility__("hidden")));
 void mal_runtime_reset(void) __attribute__((__visibility__("hidden")));
+str mal_session_uuid;
 int mal_trace;
 void mal_unquote(char *msg);
 str manifoldRef;
@@ -2255,12 +2261,11 @@ int mnstr_writeInt_wrap(Stream *S, int *
 str mnstr_writeIntwrap(void *ret, Stream *S, int *data);
 int mnstr_write_string(Stream *S, str data);
 str mnstr_write_stringwrap(void *ret, Stream *S, str *data);
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