Hello, I was wondering if any of you have encountered similar issues, and how you resolve them?
I have recently updated my macOS, and after this, I could not run coot from ccp4i2. The mistakes I was getting were: 1. -ERROR- Ccoot_rebuild:56 Error in wrapper coot_rebuild 0.0:: External process exited with exit code != 0 Process: coot -ERROR- Ccoot_rebuild:47 Error in wrapper coot_rebuild 0.0:: Error in checking external process after completion exit status and code: 0 1 2. ------ Coot crashed - trying to diagnose ----- No core file found. No debugging After some attempts to fix it (including re-installing both CCP4 and XQuartz) I have set ccp4i2 to use coot-1 instead. However, if it is called from the GUI from the previous job (Refmac) it shows that it has selected the coordinates, maps, etc., but when coot-1 opens, it has nothing. I have to manually load everything, and then for some reason, the electron density map is centered on the top right corner, even if I open it in full-screen mode (screenshot attached). Ideally, I would like to go back to Coot. Setting up the automatic loading of maps and coordinates would be nice. At the bare minimum, I would like the map to be centered in the middle of the screen. If you had any of these similar issues, please let me know how you have resolved them! Best regards, Vladyslav Yadrykhinsky PhD-candidate University of Bergen ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
