Lijun Would you mind sending me the files?
BTW, there are several ways to get help from Phenix here. https://phenix-online.org/help Cheers Nigel --- Nigel W. Moriarty Building 91, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Email : nwmoria...@lbl.gov Web : CCI.LBL.gov ORCID : orcid.org/0000-0001-8857-9464 On Fri, Apr 18, 2025 at 11:49 AM Lijun Liu <lijunli...@gmail.com> wrote: > Hi: > > First of all: I am not sure if it is a coot problem or a phenix problem? > > I am using coot version of 0.9.8.95. When I read some .cif coordinate > files, it gave error like below: > > ============================== > > INFO:: Reading coordinate file: KlaeA_1011.cif > ERROR:: failed to get cell > INFO:: There was an error reading KlaeA_1011.cif. > INFO:: read error 23 READ: Expected data field not found. > CIF ITEM: structure _cell.z_pdb data [NULL] > > ============================== > > I had some .cif files output from the same version of phenix.refine, but > they were loading without any problems. I checked the head section of > SYMM and CELLS of those files, all looked like normal, same style of > lines with different values only. These .cif files, no matter working > or not, did not contain strings "_cell.z_" in file. > > Launching coot firstly and then trying loading those .cif file from > file/open-coordinates menu, not working either. > > I checked around, other users also had the similar problems. > > Also, no problems when loading the REFMAC .mmcif files, with a few tests. > > Thanks for suggestions. > > Lijun > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
