Hi Tommi, two remarks: 1) setting the PATH on macOS: put the line export PATH=/Users/xxx/XDS-Apple_M1/:$PATH into ~/.zshrc 2) you don't have to convert .hdf5 files to .cbf ; just use the LIB=/some/directory/dectris-neggia-Apple-arm64.so line in XDS.INP, and give the master file in the NAME_TEMPLATE_OF_DATA_FRAMES= line.
(the plugin is at https://wiki.uni-konstanz.de/pub/mac_bin/dectris-neggia-Apple-arm64.so ; see also https://wiki.uni-konstanz.de/xds/index.php/Installation#XDS_package_for_Macs_with_Apple_M_processors ) Best, Kay On Thu, 3 Apr 2025 19:58:31 +0000, Kajander, Tommi A <tommi.kajan...@helsinki.fi> wrote: >Dear Tim, > >Yes very excellent point� : ) I was just running this with the full path >given, just installed in rush to test, didn�t have time for anything else. (I >guess that�s what you get for rushing things) > >That must be the problem (finding the other pieces of program ..as I don�t >have the path set� indeed, obviously I am not very good in this). I had it in >local dir. before working fine, not sure what I did. But maybe I try to do it >properly tomorrow. >(Will report if still doesn�t work. I assume it will.) > >Thanks for the help! >Tommi > > >On 3.4.2025, 21.47, "Tim Gruene" <tim.gru...@univie.ac.at> wrote: >Dear Tommi, > >looks like your shell sh does not have the correct PATH variable. Which >is your sh linked to? Do you export PATH? Simplest work-around would >possibly to install the XDS binaries in /usr/local/bin or another >default directory. >Best, >Tim > > >On Thu, 3 Apr 2025 >16:27:11 +0000 "Kajander, Tommi A" ><tommi.kajan...@helsinki.fi<mailto:tommi.kajan...@helsinki.fi>> wrote: > >> Hello all, >> >> I seem to have a problem running XDS: >> >> sh: forkxds: command not found >> !!! ERROR !!! CANNOT OPEN OR READ FILE LP_01.tmp >> Presumably, the independent jobs supposed to have been >> started in the COLSPOT step have not run properly. This could be due >> to incomplete installation of XDS where some of the >> executables of the package are not included in the search path. >> >> Data converted from ESRF with eiger2cbf >> >> Runnings on mac mini M2 and OS Sequioa 15.3.2�. >> >> What could be wrong? (I think I do have the full installation there >> for XDS.. I can try to reinstall of course�) >> >> bash-3.2$ ls /Users/�./XDS-Apple_M1/ >> >> 2cbf forkxds mcolspot merge2cbf >> mintegrate_par rezel xds_par xscale cellparm >> geocorr mcolspot_par mintegrate pix2lab xds >> xdsconv xscale_par >> >> >> >> (used to work ok earlier but haven�t run on this computer but older >> mac book pro or iMac�) >> >> Thanks, >> Tommi >> >> >> >> >> >> ######################################################################## >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a >> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are >> available at https://www.jiscmail.ac.uk/policyandsecurity/ > > > >-- >Tim Gruene >Head of the CF Crystal Structure Analysis >Faculty of Chemistry >University of Vienna > >Phone: +43-1-4277-70202 > >GPG Key ID = A46BEE1A > > >######################################################################## > >To unsubscribe from the CCP4BB list, click the following link: >https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > >This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing >list hosted by www.jiscmail.ac.uk, terms & conditions are available at >https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
