A few updates on https://minimapai.de since my last plug.
It now allows mutations to amino acids to be made. Also, two-finger zooming on touch-screens (pinch-zooming) and the thickness of the displayed volume can be controlled by pinching with 3 fingers in much the same way. Mouse roller for zooming and the roller plus left-click click does the slabbing with a mouse. Finally, sorted out a long-overdue bit of depth-cueing. I thought it would be difficult, hence the delay, but it turns out to be only one extra instruction for three.js - fog! Best wishes, Jon Cooper. Emeritus at UCL. jon.b.coo...@protonmail.com Sent with [Proton Mail](https://proton.me/mail/home) secure email. On Sunday, 25 August 2024 at 23:25, Jon Cooper <0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: > A couple of updates to Mini Map Aide (https://minimapai.de), if anyone likes > the idea of looking at maps on mobile phones, although I know many people > look at their phones to get away from maps ;- > > It can now draw symmetry-related molecules based on the space group symbol > given in the CRYST1 card in the PDB file. At least one expert (Ian Tickle) > was not very impressed with my method for generating the symmetry-mates, so > do not expect the world's fastest performance! Still it should work for all > of the 65 enantio-morphic/genic space groups, except for R3 and R32 which are > handled as H3 and H32. A few of the more common non-standard ones also work. > It should handle about 99.89 % of the crystal structures in the PDB! > > I also spotted recently that it was not displaying many (probably most) of > the CCP4 maps which are downloadable from the EBI PDBe but that is now fixed, > I think. At some stage they switched from storing maps which cover the > deposited coordinates to storing the map for exactly one complete unit cell, > which is quite elegant because the electron density values for a molecule > that happens to be outside the cell can still be read on the fly quite easily. > Do let me know of any problems. > > Best wishes, Jon Cooper. > jon.b.coo...@protonmail.com > > Sent with [Proton Mail](https://proton.me/) secure email. > > On Sunday, 12 March 2023 at 00:11, Jon Cooper > <0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: > >> I am cautiously optimistic that there have been some improvements to my Mini >> Map Aide (a basic map viewer mainly for mobile devices): http://minimapai.de >> >> - The browser does not accidentally 'go back' on scrolling upwards in the >> graphics window. >> - Atom selection is now more accurate i.e. it almost works reliably, unlike >> before. >> - >> >> Better memory management - it can go through several hundred residues >> without crashing! >> >> - >> >> New virtual server! >> >> Best wishes, Jon Cooper. >> jon.b.coo...@protonmail.com >> >> Sent with [Proton Mail](https://proton.me/) secure email. >> >> ------- Original Message ------- >> On Wednesday, November 9th, 2022 at 00:30, Jon Cooper >> <0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: >> >>> For info, or more likely amusement, the Mini Map Aide website which I put >>> together a few months ago for looking at electron density maps, primarily >>> on mobile devices: >>> >>> http://minimapai.de >>> >>> now allows tweaks to be made to individual amino acids and basic >>> regularisation to be done, so there definitely is no excuse to shrink from >>> building, or at least tweaking, models. It is still a bit harebrained and >>> I'm not sure how the results of my geometry minimiser would stand up in any >>> validation tests but, used cautiously, it seems to give better rmsd's than >>> the 1974 lysozyme models ;-0 >>> >>> Best wishes, Jon Cooper. >>> jon.b.coo...@protonmail.com >>> >>> Sent with [Proton Mail](https://proton.me/) secure email. >>> >>> --------------------------------------------------------------- >>> >>> To unsubscribe from the CCP4BB list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> --------------------------------------------------------------- >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > --------------------------------------------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
