Hi Yahui, Here is a script-free option: https://www.bioinformatics.org/pdbeditor/wiki/. This tool provides a GUI for making the selections at the chain or residue level and copying and pasting the values that you have in mind. This is a convenient tool for manipulating the contents of PDB files.
Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Physiology College of Medicine University of Oklahoma Health Sciences S.L. Young Biomedical Research Center, Rm. 466 975 NE 10th Street<https://maps.google.com/?q=975+NE+10th+Street&entry=gmail&source=g>, BRC 466 Oklahoma City, OK 73104-5419 Central Time Zone (follows Daylight Savings Time) office: (405) 271-8300 lab: (405) 271-8313 ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Hui YAN <butterflycam...@gmail.com> Sent: Monday, January 13, 2025 8:52 AM To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: [EXTERNAL] [ccp4bb] replacing B-factor column and color accordingly Happy New Year, everyone! I am looking for a PDB editing tool to replace the B-factors numbers with another column of numbers, then color the structure by pseudo-B-factors in ChimeraX. All the atoms of one individual residue will have the same number at the B-factor column. I can possibly edit the coordinate manually atom by atom, which is not very fun to do. Does anybody know of any programme doing this process? Thanks a lot! Kind regards, Yahui ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1<https://urldefense.com/v3/__https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1__;!!GNU8KkXDZlD12Q!7vlqW1qYrPmlqWu8hYEyZ5lhpVUg0_Xn6Y8o9qyBgVfd-YivhN2TWqnUH2i836NEHbTbGcg6sTIfonD-ZAMVL42NuiZM0Xg$> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
