Re: [ccp4bb] Phenix.autobuild command problem

[zx2...@connect.hku.hk]

Dear Kay,

Thank you for your reminder. I am encountering the following error messages:

Sorry, the segment 'AAAAAAAAAAAAAAAAAAAA' (residues 1:20 of chain 'D')  could 
not be matched
to sequence.  Matching is required for rebuild_in_place.
You might try supplying a different sequence file or no sequence file

I have also attached the log file for your reference.

Thank you very much for your assistance.

Best regards,
Xin
________________________________
From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of 
zx2...@connect.hku.hk <zx2...@connect.hku.hk>
Sent: 23 September 2024 09:13
To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK>
Subject: [ccp4bb] Phenix.autobuild command problem


This is an external email.

Dear all,

I encountered an issue while running the following command with the attached 
files:

[https://res.public.onecdn.static.microsoft/assets/mail/file-icon/png/generic_16x16.png]BUCCANEER.pdb<https://connecthkuhk-my.sharepoint.com/:u:/g/personal/zx2020_connect_hku_hk/EaiKgmMxOS1Lg9BUIkXYdQcBbM3wshv-ZR1q5ssPpY5bJA>
[https://res.public.onecdn.static.microsoft/assets/mail/file-icon/png/generic_16x16.png]PHASER.1.mtz<https://connecthkuhk-my.sharepoint.com/:u:/g/personal/zx2020_connect_hku_hk/EcGf62NLnX9CmB-TGKn3_-gBKNsv7n-6ipzESzOWAyQR6Q>

phenix.autobuild data=PHASER.1.mtz model=BUCCANEER.pdb

The error message I received was:

Interestingly, this error does not occur when I use the Phenix GUI with the 
default autobuild configuration.

Could anyone help me troubleshoot this command line issue?

Thank you very much!

Best regards,
Xin

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AUTOBUILD.log
Description: AUTOBUILD.log