Dear all,
Structures determined by integrative and hybrid structure determination
methods (IHM) are now available alongside experimental structures in the
PDB archive.
These structures are deposited into and processed by the PDB-Dev system.
Each IHM structure is issued a PDB ID, reported in the PDBx/mmCIF file
in the _database_2 category, and “integrative” method provenance is
captured at _struct.pdbx_structure_determination_methodology.
Users can access and download IHM structures and associated data
atfiles.wwpdb.org/pub/pdb_ihm/ <https://files.wwpdb.org/pub/pdb_ihm/>.
Currently, holding files in JSON format, validation reports (summary and
full reports) in PDF format, and model files in PDBx/mmCIF format are
provided.
* /pdb_ihm/holdings/ (current holdings, released structures last
modified dates, unreleased entries)
* /pdb_ihm/data/entries/hash/{PDB_id}/validation_reports/ (includes
summary and full validation reports)
* /pdb_ihm/data/entries/hash/{PDB_id}/structures/ (latest version of
model files)
* For example,
https://files.wwpdb.org/pub/pdb_ihm/data/entries/zz/8zz1/structures/8zz1.cif.gz
Data may be expanded in the future based on community needs. In the near
future, IHM data will also be available via wwPDB DOI landing pages and
wwPDB partner websites.
Questions or feedback?
Contactdeposit-help@mail.wwpdb.orgorpdb-...@mail.wwpdb.org.
Kind regards,
Deborah Harrus, on behalf of the wwPDB
--
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Deborah Harrus, Ph.D.
PDBe Archive Project Leader, Biocuration Lead
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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