Lucrezia, Thanks for your help!
1) This works very well -- thanks for pointing me in the right direction. 2) Thanks 3) When I do this, no anchor appears. There's a "no intermediate atoms" error, with a 0x0 matrix of fixed atoms. Maybe it's a DNA refinement error? Cheers On Mon, Jun 3, 2024 at 1:15 PM lucrezia catapano <lucre...@mrc-lmb.cam.ac.uk> wrote: > Dear Simon, > > 1. The new clipping keybindings are ‘1’ and ‘2’ for clipping front and ‘3’ > and ‘4’ for clipping back (like in Moorhen as well). You can find them in > ‘About’- ’Shortcuts' (page 2 to be precise). > 2. We need to fix this (about a week) > 3. You center on an atom, then click on ‘Fixed atom’ on the right vertical > toolbar, then ‘Fix atom’, and an ‘anchor’ marker will appear. Then it > should work. > > Regards > Lucrezia > > > Lucrezia Catapano > Postdoctoral Scientist, Murshudov Group > MRC Laboratory of Molecular Biology > Francis Crick Avenue, > Cambridge CB2 0QH, UK. > lucre...@mrc-lmb.cam.ac.uk > > > > On 3 Jun 2024, at 17:14, Simon Vecchioni <sv1...@nyu.edu> wrote: > > CAUTION: This email originated from outside of the LMB: > *.-owner-ccp...@jiscmail.ac.uk-.* > Do not click links or open attachments unless you recognize the sender and > know the content is safe. > If you think this is a phishing email, please forward it to > phish...@mrc-lmb.cam.ac.uk > > > -- > Paul and CCP4 Community, > > Emailing the larger listserv because some of these might be useful to all. > Thanks for the updates to the latest build. > > 1) In Coot 1.1.08, the graphics are fantastic! I've been struggling to > clip the view for figure building. In old Coot, there was a "d" and "f" > keyset that would toggle the fill/depth. Now there are other commands tied > to "d" and nearby keys. Is there a menu that contains this feature, or a > way to edit key bindings? I've experimented with the graphics menus but > don't know the name of the feature I'm looking for. > > 2) Saving symmetry coordinates used to be a click operation, but now the > interface has moved away from click selection. I haven't successfully been > able to save a symmetry state--is there a good way to do this now? > > 3) Fix/Unfix atom also ran on click--I can go to a particular atom using > the GUI, but I haven't been successful in fixing that atom for refinement. > > Thanks for your advice and assistance, > Simon > > -- > Simon Vecchioni [he/his] > Postdoctoral Researcher > NYU Chemistry > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_WA-2DJISC.exe-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=mknqwWSyX8U_XQ5qD7k8Hw&m=k7xg1gclLdQISQObsTGHdYwRu4xSlQEfQeFdPel3MXe7DDQ_b25xIzqA1578pOoa&s=oeOEgdQhUFdbZmspkEqIMdaxyddF8WnD6lcYtSvtC28&e=> > > > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
