Dear Lionel, I would say it depends what do you intend to use the topology diagram for?
I personally like Overprot (https://overprot.ncbr.muni.cz/) as you can also see topological diagram for the CATH protein family.
Kind regards, Deborah On 30/05/2024 16:32, Lionel wrote:
Dear community, A biochemist asks me if I knew a webserver/tool to draw topology diagram of protein from a deposited pdb or part of it, ideally allowing edition (label, colour, etc...). For a better understanding, the topology diagram’s representation is as the picture attached, which I believe is a “key notation” topology diagram. It’s possible to get such diagram from PDBsum but they are fixed (pdf, ps) and I would say (without offence) a bit ugly. After an extensive Google/Ccp4DB/ChatGPT search, for my surprise, I found nothing helpful. It seems that “old” tools like pro-origami are gone/unavailable. I would greatly appreciate any advice on possible website or more specialized program (even if I would do the “webserver” task myself). Best, Lionel ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
-- ------------------------------------------------------------------- Deborah Harrus, Ph.D. PDBe Archive Project Leader, Biocuration Lead PDBe - Protein Data Bank in Europe European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK http://www.PDBe.org ------------------------------------------------------------------- ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
