Paul, Many thanks for fixing the [simple mutate] button for DNA in v1.1.08--works like a charm!
I would ask about two other DNA features-- 1) The [add terminal residue] button seems unresponsive for DNA, and is often quite useful; 2) There was a button chain in v0.8.9 to add base pair restraints, Calculate--Modules--Restraints, and then Restraints--DNA-Bform. Is this still present but moved? I haven't been able to dig this one out. Thanks again for your support, Simon On Thu, Apr 4, 2024 at 2:48 PM Simon Vecchioni <sv1...@nyu.edu> wrote: > Paul, > > That's fantastic and swift. Many thanks for your help, and for making COOT > the go-to for DNA slice and dice. > > Cheers > Simon Vecchioni > NYU Chemistry > > > On Thu, Apr 4, 2024, 5:43 AM Paul Emsley <pems...@mrc-lmb.cam.ac.uk> > wrote: > >> >> On 04/04/2024 02:27, Simon Vecchioni wrote: >> > >> > >> > Dear CCP4 Wizards, >> Hello Simon. >> > >> > I've upgraded to COOT v1.1.07 from 0.9.6, and am working on DNA model >> > refinement. >> exciting. >> > >> > The current setup does not seem to let me sequence mutate (simple >> > mutate or mutate residue range), as it's hard coded to an amino acid >> > drop down menu. Edit-->Replace residue with three letter code (for DNA >> > "DC", "DA", etc.) also does not seem to swap residues. >> >> I see what you mean. The first is an oversight, the second is a bug. >> >> The first of these will be easy to fix, I think the second not so easy >> as it involves the Python gui interface. However, I can give it a bash >> and it should be available on Monday if you are using the HEAD build. >> >> > >> > Am I missing a setting or button click/centering/toggle? Is there a >> > workaround for this short of reverting to an older version where these >> > features were well oiled? >> > >> Not until next week - or somewhat longer than that probably if you are >> only using releases. >> >> Paul. >> >> >> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
