**
*Dear all,*
*We're excited to announce significant improvements to ligand data
access and organisation within the PDBe FTP area. These updates aim to
empower your research by simplifying data retrieval and providing deeper
insights into protein-ligand interactions.*
*Key Enhancements:*
*
*Comprehensive Ligand Interaction Data: Two new data files,
Interacting_chains_with_ligand_functions.tsv and
pdb_bound_molecules.tsv, enable large-scale analyses of ligand
interactions across the entire PDB archive including functional
categorisation such as drug-like, reactant-like or cofactor-like.*
*
*Streamlined FTP Directory Structure: The revamped FTP area features
dedicated folders for Chemical Component Definitions (CCDs),
Peptide-like Reference Definitions (PRDs), Covalently Linked
Components (CLCs), and additional data files, facilitating intuitive
data navigation.*
*Benefits for You:*
*
*Perform large-scale ligand interaction analyses across the entire
PDB using complete ligand representations.*
*
*Quick access to all the ligands bound to a specific protein or
identifying all the proteins binding to a specific ligand*
*
*Gain deeper insights into protein function through ligand
interaction and classification.*
*
*Easily access and navigate ligand data with clear file organisation
and unique identifiers.*
*We believe these improvements will enhance ligand data analysis through
streamlined data access and additional functional insights. *
*For more information, visit the PDBe news item
at:https://www.ebi.ac.uk/pdbe/news/improved-access-ligand-data-and-annotations-pdbe-ftp
<https://www.ebi.ac.uk/pdbe/news/improved-access-ligand-data-and-annotations-pdbe-ftp>*
*Or visit the PDBe FTP area
directly:https://ftp.ebi.ac.uk/pub/databases/msd/pdbechem_v2/
<https://ftp.ebi.ac.uk/pub/databases/msd/pdbechem_v2/>*
*Should you have any questions or require further assistance, please
don't hesitate to contact us.*
*
Sincerely,
Deborah Harrus
The PDBe Team
*
--
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Deborah Harrus, Ph.D.
PDBe Archive Project Leader, Biocuration Lead
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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