Dear ccp4bb,
The 3D-Beacons resource has undergone some major improvements, including
updates to the API and a new sequence search feature.
The 3D-Beacons Network, originally announced in September 2021
<https://www.ebi.ac.uk/pdbe/news/3d-beacons-network-protein-structure-data-all-one-place>,
brings together experimentally determined and predicted protein
structure models, alongside relevant quality metrics, from several
providers and makes them freely available in one place. The data are
provided by a number of services, including the Protein Data Bank in
Europe (PDBe), AlphaFold DB, SWISS-MODEL, Protein Ensemble Database
(PED), Small Angle Scattering Biological Data Bank (SASBDB), Genome3D,
and PDBe Knowledge Base (PDBe-KB). 3D-Beacons allows users to search
using UniProt accession and access protein structure models from all
these different providers in a standardised format.
The 3D-Beacons resource has been updated to include some major
improvements to the infrastructure and the public website
(3d-beacons.org <https://3d-beacons.org/>). This includes an update to
the API to support POST queries to the summary endpoint, up to a maximum
of 10 accessions. The release also includes a brand new sequence search
feature, allowing users to easily find relevant structures based on an
input protein sequence.
For more information, view the full news item at
https://www.ebi.ac.uk/pdbe/news/3d-beacons-update-search-structural-models-protein-sequence
Kind Regards, David
--
David Armstrong
Outreach and Training Lead
PDBe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
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