Dear Afsan,
Based on the information you provided, it's possible that the crashing issue in COOT when attempting to merge the monomers could be due to several reasons. Here are a few suggestions and potential workarounds you can try: Either Update COOT or Import monomers as coordinates: Instead of using the "Get monomer" option in COOT, you can try importing the monomers as separate coordinate files. You can save the Glycerol or BCT coordinates in a PDB or CIF file format and then import them into COOT using the "File" menu or drag-and-drop functionality. This approach bypasses any potential issues with the "Get monomer" option. I hope these suggestions help you overcome the crashing issue in COOT while adding monomers to your cryo-EM data. Best regards, Kirti On Tue, Jun 27, 2023 at 4:01 PM Afshan Begum < 000001d12a434d1a-dmarc-requ...@jiscmail.ac.uk> wrote: > Dear expert, > > I am currently working on building my cryo-EM data using COOT. However, I > have encountered an issue when trying to add monomers such as Glycerol or > BCT using their letter code from the "Get monomer" option in COOT. Whenever > I attempt to merge them into my coordinate, COOT crashes. > > I would greatly appreciate any suggestions or advice on how to overcome > this issue. I am currently using version 0.9.8.5 of COOT on a Mac operating > system. I am unsure if this is a bug or if there is a specific workaround > for this situation. > > Thank you for your assistance. > > Best Regards > =============================== > Afshan Begum > <http://de.mc517.mail.yahoo.com/mc/compose?to=bet...@unisgi1.desy.de> > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > -- With best regards, Kirti Sonkar Molecular Pathology Group International Center for Genetic Engineering and Biotechnology (ICGEB) AREA Science Park , Padriciano 99, 34149 Trieste, Italy ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
