Or you could use Gesamt - also in CCP4.

Harry

> On 6 Mar 2023, at 13:15, Kay Diederichs <kay.diederi...@uni-konstanz.de> 
> wrote:
> 
> Dear Armando,
> 
> besides THESEUS, you could use SUPERPOSE (in CCP4) or USalign 
> (https://zhanggroup.org/US-align/).
> In my tests, THESEUS sometimes crashed in different ways. USalign is very 
> robust; SUPERPOSE is fast.
> 
> HTH,
> Kay
> 
> On Mon, 6 Mar 2023 08:35:20 +0100, Armando Albert <xalb...@iqfr.csic.es> 
> wrote:
> 
>> Dear all, 
>> I want to align several structures we obtained from a fragment screening 
>> campaign and cluster them according to RMSD. 
>> Is MNYFIT still running? What else can I run?
>> Thank you
>> Armando
>> 
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