Sounds like your kernel might think "forkxds" is creating a "fork
bomb". Too many sub-processes firing off in too short a time triggers
this. On one of my systems, I fixed it by editing
/etc/security/limits.d/20-nproc.conf so that users are allowed ~10x more
pids than normal. This tends to prevent these mysterious "Killed" errors.
HTH?
-James Holton
MAD Scientist
On 11/28/2022 7:44 AM, Demetres D. Leonidas wrote:
Dear all,
I do not know if this is the right list and I would like to apologize
if it is not.
We have repeatedly experienced xds crashes in machines running ubuntu
22.04.1 with the following message repeated several times at the
INTEGRATE step
/usr/local/bin/forkxds: line 60: 3427 Done echo "$itask"
3428 Killed | $amain
We are trying to process data from P13 at EMBL-Hamburg.
We are running XDS version Jan 10, 2022 BUILT=20220820
Any ideas ?
Demetres
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