Dear All, Please suggest me a program to compute the pairwise CA-distance plots of residues in other subunits after superposition of one particular subunit. My enzyme is a homotetrameric one and upon binding of a substrate there are changes in relative orientations among four subunits (i.e., allosteric effects). Therefore, I would like to superpose one particular subunit between an unliganded and a substrate-bound structure, and compute the pairwise CA-distance plots of equivalent residues in other three subunits. By using these approaches, I could find out a relative movement of subunits in a tetramer..
Thanks in advance Sangkee ============================== Sangkee Rhee, Ph.D. College of Agrculture & Life Sciences Seoul National University SEOUL, KOREA e-mail: srhee...@snu.ac.kr <mailto:srhee...@snu.ac.kr> ============================== ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
