Dear Neno, Mapman can do exactly that too. Shameless plug: How to do it is described in this paper: http://scripts.iucr.org/cgi-bin/paper?S2059798319009926
Mapman appears to available on github now: https://github.com/martynwinn/Uppsala-Software-Factory Best, Julia -- Dr. Julia Griese Assistant Professor, Docent Department of Cell and Molecular Biology Uppsala University BMC, Box 596 SE-75124 Uppsala Sweden email: julia.gri...@icm.uu.se phone: +46-(0)18-471 4982 http://www.icm.uu.se/structural-biology/griese-lab/ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Neno Vuksanovic <coelicolo...@gmail.com> Reply-To: Neno Vuksanovic <coelicolo...@gmail.com> Date: Wednesday, 10 August 2022 at 16:00 To: "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] Quantifying electron density inside of a given volume Dear All, I would like to quantify electron density inside of positive Fo-Fc blobs in active sites of multiple protomers in the map and compare them. I am aware that I can interpolate maps and obtain density values at coordinate points using either MapMan, Chimera or Coot, but I would like to know if there is a tool that would let me designate a sphere of a certain volume and calculate total electron density inside it? Best Regards, Neno ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
